SNP Profiles of GU 171 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
1._GC-01-94-5-11
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
2._GC-01-94-5-11
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
3._RUQ_195
____________GG______________
4._GU_171_/C
__________CCGG__AA__________
5._GU_171_/C
__________CCGG__AA__________
6._GU_171_/C
__________CCGG__AA__________
7._GU_171_/C
__________CCGG__AA__________
8._GU_171_/C
__________CCGG__AA__________
9._GU_171_/C
__________CCGG__AA__________
10._GU_171_/C
__________CCGG__AA__________
11._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
12._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
13._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
14._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
15._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
16._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
17._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
18._RUQ_195
__________CC__GG____GG______
19._RUQ_195
__________CCGG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAACCGGAAGGAAGGCCAAAAAA
1._GC-01-94-5-11
AAAAAAAA__GGAAGGAAGGCCAAAAAA
2._GC-01-94-5-11
AAAAAAAACCGGAAGGAAGGCCAAAAAA
3._RUQ_195
__TT____________AA__GG______
4._GU_171_/C
__TTTT______TT__AACCGGAATTTT
5._GU_171_/C
__TTTT______TT__AACCGGAATTTT
6._GU_171_/C
__TTTT______TT__AACCGGAATTTT
7._GU_171_/C
__TTTT______TT__AACCGGAATTTT
8._GU_171_/C
__TTTT______TT__AACCGGAATTTT
9._GU_171_/C
__TTTT______TT__AACCGGAATTTT
10._GU_171_/C
__TTTT______TT__AACCGGAATTTT
11._GC-01-094-5-11
TTTTTTTT__GGTTCCAACCGGAATTTT
12._GC-01-094-5-11
TTTTTTTT__GGTTCCAACCGGAATTTT
13._GC-01-094-5-11
TTTTTTTT__GGTTCCAACCGGAATTTT
14._GC-01-094-5-11
TTTTTTTT__GGTTCCAACCGGAATTTT
15._GC-01-094-5-11
TTTTTTTT__GGTTCCAACCGGAATTTT
16._GC-01-094-5-11
TTTTTTTT__GGTTCCAACCGGAATTTT
17._GC-01-094-5-11
TTTTTTTT__GGTTCCAACCGGAATTTT
18._RUQ_195
__TT__TT______CCAACCGGAATTTT
19._RUQ_195
__TTTT__CC__TT__AACCGGAGTTTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
1._GC-01-94-5-11
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
2._GC-01-94-5-11
GGTTGGAAGGGGGGGGGG__TTTTGGGG
3._RUQ_195
__________GG____________GG__
4._GU_171_/C
CC____AACCGG__CCGG____TT____
5._GU_171_/C
CC____AACCGG__CCGG____TT____
6._GU_171_/C
CC____AACCGG__CCGG____TT____
7._GU_171_/C
CC____AACCGG__CCGG____TT____
8._GU_171_/C
CC____AACCGG__CCGG____TT____
9._GU_171_/C
CC____AACCGG__CCGG____TT____
10._GU_171_/C
CC____AACCGG__CCGG____TT____
11._GC-01-094-5-11
CCAAGGAACCGGGGCCGGGGAATTGGGG
12._GC-01-094-5-11
CCAAGGAACCGGGGCCGGGGAATTGGGG
13._GC-01-094-5-11
CCAAGGAACCGGGGCCGGGGAATTGGGG
14._GC-01-094-5-11
CCAAGGAACCGGGGCCGGGGAATTGGGG
15._GC-01-094-5-11
CCAAGGAACCGGGGCCGGGGAATTGGGG
16._GC-01-094-5-11
CCAAGGAACCGGGGCCGGGGAATTGGGG
17._GC-01-094-5-11
CCAAGGAACCGGGGCCGGGGAATTGGGG
18._RUQ_195
____GGAACCGG__CC________GGGG
19._RUQ_195
CC____AACCGG__CCGG____TT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._GC-01-94-5-11
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._GC-01-94-5-11
AAAAGGGGGGTTGGAACCAAGGCCGGCC
3._RUQ_195
__________________________CC
4._GU_171_/C
AA______GG________AA__GG__CC
5._GU_171_/C
AA______GG________AA__GG__CC
6._GU_171_/C
AA______GG________AA__GG__CC
7._GU_171_/C
AA______GG________AA__GG__CC
8._GU_171_/C
AA______GG________AA__GG__CC
9._GU_171_/C
AA______GG________AA__GG__CC
10._GU_171_/C
AA______GG________AA__GG__CC
11._GC-01-094-5-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
12._GC-01-094-5-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
13._GC-01-094-5-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
14._GC-01-094-5-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
15._GC-01-094-5-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
16._GC-01-094-5-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
17._GC-01-094-5-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
18._RUQ_195
AA__________CC____AA__GG__CC
19._RUQ_195
AA______AG________AA__GG__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGGGGGGGAACCAAAAACAAAAAACC
1._GC-01-94-5-11
CCGGGGGGGGAACCAAAAACAAAAAACC
2._GC-01-94-5-11
CCGGGGGGGGAACCAAAAACAAAAAACC
3._RUQ_195
CC__CC______GGAA________AACC
4._GU_171_/C
CC____CC____GG______________
5._GU_171_/C
CC____CC____GG______________
6._GU_171_/C
CC____CC____GG______________
7._GU_171_/C
CC____CC____GG______________
8._GU_171_/C
CC____CC____GG______________
9._GU_171_/C
CC____CC____GG______________
10._GU_171_/C
CC____CC____GG______________
11._GC-01-094-5-11
CCCCCCCCAAAAGGAATTGTTTTTAAGG
12._GC-01-094-5-11
CCCCCCCCAAAAGGAATTGTTTTTAAGG
13._GC-01-094-5-11
CCCCCCCCAAAAGGAATTGTTTTTAAGG
14._GC-01-094-5-11
CCCCCCCCAAAAGGAATTGTTTTTAAGG
15._GC-01-094-5-11
CCCCCCCCAAAAGGAATTGTTTTTAAGG
16._GC-01-094-5-11
CCCCCCCCAAAAGGAATTGTTTTTAAGG
17._GC-01-094-5-11
CCCCCCCCAAAAGGAATTGTTTTTAAGG
18._RUQ_195
CC__CCCC____GGAATT____TTAA__
19._RUQ_195
CC____CC____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
1._GC-01-94-5-11
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
2._GC-01-94-5-11
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
3._RUQ_195
__GG____GG____________AAX_XX_X
4._GU_171_/C
__GGCC______CCGG__AATTAAX_XX_X
5._GU_171_/C
__GGCC______CCGG__AATTAAX_XX_X
6._GU_171_/C
__GGCC______CCGG__AATTAAX_XX_X
7._GU_171_/C
__GGCC______CCGG__AATTAAX_XX_X
8._GU_171_/C
__GGCC______CCGG__AATTAAX_XX_X
9._GU_171_/C
__GGCC______CCGG__AATTAAX_XX_X
10._GU_171_/C
__GGCC______CCGG__AATTAAX_XX_X
11._GC-01-094-5-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
12._GC-01-094-5-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
13._GC-01-094-5-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
14._GC-01-094-5-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
15._GC-01-094-5-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
16._GC-01-094-5-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
17._GC-01-094-5-11
__GGCCCCGG__CCGGCCAATTAAX_XX_X
18._RUQ_195
__GGCC__GGCC__________AAX_XX_X
19._RUQ_195
__GGCC______CCGG__AATTAAX_XX_X

Input profile: GU_171_/C RUQ_195

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_171_/C GC-01-94-5-11

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_171_/C GC-01-94-5-11

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

3._GU_171_/C RUQ_195

68.8 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

4._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 10 > F
 Dapeng Zhang, 2016

5._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 7
 Dapeng Zhang, 2016

6._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 9
 Dapeng Zhang, 2016

7._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 12
 Dapeng Zhang, 2016

8._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 14
 Dapeng Zhang, 2016

9._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 1 > FP
 Dapeng Zhang, 2016

10._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 2 > FP
 Dapeng Zhang, 2016

11._GU_171_/C GC-01-094-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

12._GU_171_/C GC-01-094-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

13._GU_171_/C GC-01-094-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

14._GU_171_/C GC-01-094-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._GU_171_/C GC-01-094-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

16._GU_171_/C GC-01-094-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._GU_171_/C GC-01-094-5-11

46.2 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._GU_171_/C RUQ_195

45.9 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._GU_171_/C RUQ_195

45.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998