SNP Profiles of GU_241_P   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
1._GU_123_/V___
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
2._GU_123_/V___
____________GG______________
3._GU_123_/V___
____________GG______________
4._GU_123_/V___
__________CC__GG____GG______
5._GU_123_/V___
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
1._GU_123_/V___
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
2._GU_123_/V___
__TT__________AA__GG________
3._GU_123_/V___
__TT__________AA__GG________
4._GU_123_/V___
__TT__TT____CCAACCGGGGTTTT__
5._GU_123_/V___
__TT__TT____CCAACCGGGGTTTT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
1._GU_123_/V___
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
2._GU_123_/V___
________GG____________GG____
3._GU_123_/V___
________GG____________GG____
4._GU_123_/V___
__GGAACCGG__CC________GGGGAA
5._GU_123_/V___
__GGAACCGG__CC________GGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGGGGGGGTTGGAACCAAGGCCAGCCCC
1._GU_123_/V___
GGGGGGGGTTGGAACCAAGGCCAGCCCC
2._GU_123_/V___
________________AA______CCCC
3._GU_123_/V___
________________AA______CCCC
4._GU_123_/V___
__________CC____AA__GG__CCCC
5._GU_123_/V___
__________CC____AA__GG__CCCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGAAAAAACCAAAACCAAAAAACCGG
1._GU_123_/V___
GGGGAAAAAACCAAAACCAAAAAACCGG
2._GU_123_/V___
__CC______GGAA________AACC__
3._GU_123_/V___
__CC______GGAA________AACC__
4._GU_123_/V___
__CCTT____GGAATT____TTAA____
5._GU_123_/V___
__CCTT____GGAATT____TTAA____
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
1._GU_123_/V___
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
2._GU_123_/V___
GG____GG______________X_XX_XX_X
3._GU_123_/V___
GG____GG____________AAX_XX_XX_X
4._GU_123_/V___
GGCC____CC__________AGX_XX_XX_X
5._GU_123_/V___
GGCC____CC__________AAX_XX_XX_X

Input profile: GU_123_/V RUQ_1068

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_123_/V MITC-000597

identical
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

2._GU_123_/V RUQ_1068

68.8 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._GU_123_/V RUQ_187

67.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

4._GU_123_/V RUQ_1068

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._GU_123_/V RUQ_187

43.1 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998