SNP Profiles of GU_241_P   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
1._GU_114_/P___
____________GG______________
2._GU_114_/P___
__________CC________GG______
3._GU_114_/P___
__________CCGG__AA__________
4._GU_114_/P___
__________CCGG__AA__________
5._GU_114_/P___
__________CCGG__AA__________
6._GU_114_/P___
__________CCGG__AA__________
7._GU_114_/P___
__________CCGG__AA__________
8._GU_114_/P___
__________CCGG__AA__________
9._GU_114_/P___
__________CCGG__AA__________
10._GU_114_/P___
__________CC____AA__________
11._GU_114_/P___
__________CCGG__AA__________
12._GU_114_/P___
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAGCCGGAAGGAAGGGGGGAAAA
1._GU_114_/P___
__TT____________AA__CC______
2._GU_114_/P___
______________CCAA__GG____TT
3._GU_114_/P___
__TTTT__CC__TT__AACCCCGGTTTT
4._GU_114_/P___
__TTTT______TT__AACCCCGGTT__
5._GU_114_/P___
__TTTT______TT__AACC__GGTTTT
6._GU_114_/P___
__TTTT__CC__TT__AACCCCGGTTTT
7._GU_114_/P___
__TTTT______TT__AACCCCGGTTTT
8._GU_114_/P___
__TTTT______TT__AACCCCGGTTTT
9._GU_114_/P___
__TTTT______TT__AACCCCGGTTTT
10._GU_114_/P___
__TTTT______TT__AACCCCGGTTTT
11._GU_114_/P___
__TTTT______TT__AACCCCGGTTTT
12._GU_114_/P___
__TT__CT______CCAACCCCGGTTTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
1._GU_114_/P___
__________GG____________GG__
2._GU_114_/P___
____GGAAGGGG______________GG
3._GU_114_/P___
CC____AA__GG__CCGG____AA____
4._GU_114_/P___
CC____AACCGG__CCGG____AA____
5._GU_114_/P___
CC____AACCGG__CCGG____AA____
6._GU_114_/P___
CC____AACCGG__CCGG____AA____
7._GU_114_/P___
CC____AACCGG__CCGG____AA____
8._GU_114_/P___
CC____AACCGG__CCGG____AA____
9._GU_114_/P___
CC____AACCGG__CCGG____AA____
10._GU_114_/P___
CC____AACCGG__CCGG____AA____
11._GU_114_/P___
CC____AACCGG__CCGG____AA____
12._GU_114_/P___
____GGAACCGG__CC________GGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._GU_114_/P___
__________________AA______CC
2._GU_114_/P___
AATT________CC____________CC
3._GU_114_/P___
AA______AG________AA__GG__CC
4._GU_114_/P___
AA______GG________AA__GG__CC
5._GU_114_/P___
AA______GG________AA__GG__CC
6._GU_114_/P___
AA______AG________AA__GG__CC
7._GU_114_/P___
AA______GG________AA__GG__CC
8._GU_114_/P___
AA______GG________AA__GG__CC
9._GU_114_/P___
AA______GG________AA__GG__CC
10._GU_114_/P___
AA______GG________AA__GG__CC
11._GU_114_/P___
AA______GG________AA__GG__CC
12._GU_114_/P___
AA__________CC____AA__GG__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGGGAGAGAACCAAAACCAAAAAACC
1._GU_114_/P___
CC__CC______GGAA________AACC
2._GU_114_/P___
CC__CC____________GG________
3._GU_114_/P___
CC____CT____GG______________
4._GU_114_/P___
CC____CT____GG______________
5._GU_114_/P___
CC____CT____GG______________
6._GU_114_/P___
CC____CT____GG______________
7._GU_114_/P___
CC____CT____GG______________
8._GU_114_/P___
CC____CT____GG______________
9._GU_114_/P___
CC____CT____GG______________
10._GU_114_/P___
CC____CT____GG______________
11._GU_114_/P___
CC____CT____GG______________
12._GU_114_/P___
CC__CCCT____GGAATT____TTAA__
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
1._GU_114_/P___
__GG____GG____________AGX_XX_X
2._GU_114_/P___
GGCCCC______________CC__X_XX_X
3._GU_114_/P___
__GGCC______CCGG__AACCAGX_XX_X
4._GU_114_/P___
__GGCC______CCGG__AACCAGX_XX_X
5._GU_114_/P___
__GGCC______CCGG__AACCAGX_XX_X
6._GU_114_/P___
__GGCC______CCGG__AACCAGX_XX_X
7._GU_114_/P___
__GGCC______CCGG__AACCAGX_XX_X
8._GU_114_/P___
__GGCC______CCGG__AACCAGX_XX_X
9._GU_114_/P___
__GGCC______CC____AACCAGX_XX_X
10._GU_114_/P___
__GGCC______CCGG__AACCAGX_XX_X
11._GU_114_/P___
__GGCC______CCGG__AACC__X_XX_X
12._GU_114_/P___
__GGCC____CC__________AGX_XX_X

Input profile: GU_114_/P RUQ_813

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_114_/P RUQ_813

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._GU_114_/P RUQ_813

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

3._GU_114_/P

48.5 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X3 Y18
 Dapeng Zhang, 2016

4._GU_114_/P

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 2
 Dapeng Zhang, 2016

5._GU_114_/P

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 12
 Dapeng Zhang, 2016

6._GU_114_/P RUQ_813

47.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._GU_114_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 1
 Dapeng Zhang, 2016

8._GU_114_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 7
 Dapeng Zhang, 2016

9._GU_114_/P

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 3
 Dapeng Zhang, 2016

10._GU_114_/P

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 9
 Dapeng Zhang, 2016

11._GU_114_/P

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 5
 Dapeng Zhang, 2016

12._GU_114_/P RUQ_813

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998