SNP Profiles of B 12 /1 [POU]   View Data

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 Key

 1234567891011121314
_Input profile
CCCCAGCCAAGGAGAATTAAAGGGAAAA
1._RUQ_1541
____________AG______________
2._GC-05-093-2-44
CCCCAGCCTTCCAG__TTTTAGCCTTTT
3._GC-05-093-2-44
CCCCAGCCTTCCAGTTTTTTAGCCTTTT
4._GC-05-093-2-44
CCCCAGCCTTCCAGTTTTTTAGCCTTTT
5._B_12_/1_[POU]
__________CCAG__TT__________
6._B_12_/1_[POU]
__________CCAG__TT__________
7._RUQ_1541
__________CCAG__TT__________
8._B_12_/1_[POU]
__________CCAG__TT__________
9._GC-05-093-2-44
CCCCAGCCTTCCAGTTTTTTAGCCTTTT
10._GC-05-093-2-44
CCCCAGCCTTCCAGTTTTTTAGCCTTTT
11._B_12_/1_[POU]
__________CCAG__TT__________
12._B_12_/1_[POU]
__________CCAG__TT__________
13._B_12_/1_[POU]
__________CCAG__TT__________
14._RUQ_1541
__________CC__TT____AG______
 1516171819202122232425262728
_Input profile
AAACGGAGCCGGAAAACCAGCGGGACAG
1._RUQ_1541
__GT____________CC__CG______
2._GC-05-093-2-44
TTGTCCTTCCGGTTTTCCCTCGGGGTCT
3._GC-05-093-2-44
TTGTCCTT__GGTTTTCCCTCGGGGT__
4._GC-05-093-2-44
TTGTCCTT__GGTTTTCCCTCGGGGTCT
5._B_12_/1_[POU]
__GTCC______TT__CCCTCGGGGT__
6._B_12_/1_[POU]
__GTCC__CC__TT__CCCTCGGGGTCT
7._RUQ_1541
__GTCC__CC__TT__CCCTCGGGGTCT
8._B_12_/1_[POU]
__GTCC__CC__TT__CCCTCGGGGTCT
9._GC-05-093-2-44
TTGTCCTT__GGTTTTCCCTCGGGGTCT
10._GC-05-093-2-44
TTGTCCTT__GGTTTTCCCTCGGGGTCT
11._B_12_/1_[POU]
__GTCC______TT__CCCTCGGGGTCT
12._B_12_/1_[POU]
__GTCC______TT__CCCTCGGGGTCT
13._B_12_/1_[POU]
__GTCC______TT__CCCTCGGGGTCT
14._RUQ_1541
__GT__CT______TTCCCTCGGGGTCT
 2930313233343536373839404142
_Input profile
GGATGGAAGGAAGGGGGGCCAAAAGGGG
1._RUQ_1541
__________AA____________GG__
2._GC-05-093-2-44
CCATGGAACCAAGGCCGGGGTTAAGGGG
3._GC-05-093-2-44
CCATGGAACCAAGGCCGGGGTTAAGGGG
4._GC-05-093-2-44
CCATGGAACCAAGGCCGGGGTTAAGGGG
5._B_12_/1_[POU]
CC____AACCAA__CCGG____AA____
6._B_12_/1_[POU]
CC____AACCAA__CCGG____AA____
7._RUQ_1541
CC____AACCAA__CCGG____AA____
8._B_12_/1_[POU]
CC____AACCAA__CCGG____AA____
9._GC-05-093-2-44
CCATGGAACCAAGGCCGGGGTTAAGGGG
10._GC-05-093-2-44
CCATGGAACCAAGGCCGGGGTTAAGGGG
11._B_12_/1_[POU]
CC____AACCAA__CCGG____AA____
12._B_12_/1_[POU]
CC____AACCAA__CCGG____AA____
13._B_12_/1_[POU]
CC____AACCAA__CCGG____AA____
14._RUQ_1541
____GGAACCAA__CC________GGGG
 4344454647484950515253545556
_Input profile
TTGGAAAAAGAAGGGGAACCAGACGGGG
1._RUQ_1541
__________________CC______GG
2._GC-05-093-2-44
TTCCAAAAAGAACC__AACCAGGTGGGG
3._GC-05-093-2-44
TTCCAAAAAGAACC__AACCAGGTGGGG
4._GC-05-093-2-44
TTCCAAAAAGAACC__AACCAGGTGGGG
5._B_12_/1_[POU]
TT______AG________CC__GT__GG
6._B_12_/1_[POU]
TT______AG________CC__GT__GG
7._RUQ_1541
TT______AG________CC__GT__GG
8._B_12_/1_[POU]
TT______AG________CC__GT__GG
9._GC-05-093-2-44
TTCCAAAAAGAACC__AACCAGGTGGGG
10._GC-05-093-2-44
TTCCAAAAAGAACC__AACCAGGTGGGG
11._B_12_/1_[POU]
TT______AG________CC__GT__GG
12._B_12_/1_[POU]
TT______AG________CC__GT__GG
13._B_12_/1_[POU]
TT______AG________CC__GT__GG
14._RUQ_1541
TT__________CC____CC__GT__GG
 5758596061626364656667686970
_Input profile
CCGGAGGGAAAAACAGAAAAAAAACCCG
1._RUQ_1541
CC__CT______GTAG________CCCT
2._GC-05-093-2-44
CCCCCTCCAAGGGTAGTTTTTTTTCCCG
3._GC-05-093-2-44
CCCCCTCCAAGGGTAGTTTTTTTTCCCG
4._GC-05-093-2-44
CCCCCTCCAAGGGTAGTTTT__TTCCCG
5._B_12_/1_[POU]
CC____CC____GT______________
6._B_12_/1_[POU]
CC____CC____GT______________
7._RUQ_1541
CC____CC____GT______________
8._B_12_/1_[POU]
CC____CC____GT______________
9._GC-05-093-2-44
CCCCCTCCAAGGGTAGTTTTTTTTCCCG
10._GC-05-093-2-44
CCCCCTCCAAGGGTAGTTTTTTTTCCCG
11._B_12_/1_[POU]
CC____CC____GT______________
12._B_12_/1_[POU]
CC____CC____GT______________
13._B_12_/1_[POU]
CC____CC____GT______________
14._RUQ_1541
CC__CTCC____GTAGTT____TTCC__
 717273747576777879808182  
_Input profile
AACCAACCAGCCAGGGAGAAAGAGX_XX_X
1._RUQ_1541
__GG____AG____________AGX_XX_X
2._GC-05-093-2-44
AAGGTTGGAGCCCTGGCTAACTAGX_XX_X
3._GC-05-093-2-44
AAGGTTGGAGCCCTGGCTAACTAGX_XX_X
4._GC-05-093-2-44
AAGGTTGGAGCCCTGGCTAACTAGX_XX_X
5._B_12_/1_[POU]
__GGTT______CTGG__AACTAGX_XX_X
6._B_12_/1_[POU]
__GGTT______CTGG__AACTAGX_XX_X
7._RUQ_1541
__GGCT______CTGG__AACTAGX_XX_X
8._B_12_/1_[POU]
__GGTT______CTGG__AACTAGX_XX_X
9._GC-05-093-2-44
AAGGTTGGAGCCCTGGCTAACTAGX_XX_X
10._GC-05-093-2-44
AAGGTTGGAGCCCTGGCTAACTAGX_XX_X
11._B_12_/1_[POU]
__GGTT______CTGG__AACTAGX_XX_X
12._B_12_/1_[POU]
__GGTT______CTGG__AACTAGX_XX_X
13._B_12_/1_[POU]
__GGTT______CTGG__AACTAGX_XX_X
14._RUQ_1541
__GGTT____CC__________AGX_XX_X

Input profile: B_12_/1_[POU] RUQ_1541

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._B_12_/1_[POU] RUQ_1541

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._B_12_/1_[POU] GC-05-093-2-44

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._B_12_/1_[POU] GC-05-093-2-44

51.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._B_12_/1_[POU] GC-05-093-2-44

51.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._B_12_/1_[POU]

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 3
 Dapeng Zhang, 2016

6._B_12_/1_[POU]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._B_12_/1_[POU] RUQ_1541

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._B_12_/1_[POU]

51.4 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F461 T10
 Dapeng Zhang, 2016

9._B_12_/1_[POU] GC-05-093-2-44

51.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._B_12_/1_[POU] GC-05-093-2-44

51.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._B_12_/1_[POU]

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 1 > FP
 Dapeng Zhang, 2016

12._B_12_/1_[POU]

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 5
 Dapeng Zhang, 2016

13._B_12_/1_[POU]

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 4
 Dapeng Zhang, 2016

14._B_12_/1_[POU] RUQ_1541

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998