SNP Profiles of NA-33   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCAACCAAGGAGCCAAAGAGAAAACC
1._NA_33___
CCCCAACCAAGGAGCCAAAGAGAAAACC
2._NA_33___
CCCCAACCAAGGAGCCAAAGAGAAAACC
3._NA_33___
CCCCAACCAAGGGGCCAAAGAGAAAGCC
4._NA_33___
__________CC________AG______
5._NA_33___
____________GG______________
6._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
7._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
8._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
9._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
10._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
11._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
12._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
13._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
14._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
15._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
16._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
17._NA_33___
CCCC__CCTTCCAGGGAACTAGTTTTGG
18._NA_33___
__________CCAG__AA__________
19._NA_33___
__________CCAG__AA__________
20._NA_33___
__________CCAG__AA__________
21._NA_33___
__________CCAG__AA__________
22._NA_33___
__________CCAG__AA__________
23._NA_33___
__________CCAG__AA__________
24._NA_33___
__________CCAG__AA__________
25._NA_33___
__________CCAG__AA__________
26._NA_33___
__________CCAG__AA__________
27._NA_33___
__________CCAG__AA__________
28._NA_33___
__________CCAG__AA__________
29._NA_33___
__________CCAG__AA__________
30._NA_33___
__________CCAG__AA__________
31._NA_33___
__________CCAG__AA__________
32._NA_33___
__________CTAG__AA__________
33._NA_33___
__________CCGG__AA__________
34._NA_33___
__________CCGG__AA__________
35._NA_33___
__________CC__GG____AG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACAAAAACGGAAGGACAAGGAGCCAG
1._NA_33___
AAACAAAAACGGAAGGACAAGGAGCCAG
2._NA_33___
AAACAAAA__GGAAGGACAAGGAGCCAG
3._NA_33___
AAACAAAAACGGAAGGCCAAGGAACCGG
4._NA_33___
______________CCAC__GG____CT
5._NA_33___
__GT____________CC__CC______
6._NA_33___
____TTTTAAGGTTCCACTTCCAGGGCT
7._NA_33___
TTGTTTTTAAGGTTCCACTTCCAGGGCT
8._NA_33___
TTGTTTTTAAGGTTCCACTTCCAGGGCT
9._NA_33___
TTGTTTTTAAGGTTCCACTTCCAGGGCT
10._NA_33___
TTGTTTTTAAGGTTCCACTTCCAGGGCT
11._NA_33___
TTGTTTTTAAGGTTCCACTTCCAGGGCT
12._NA_33___
TTGTTTTTAAGGTTCCACTTCCAGGGCT
13._NA_33___
TTGTTTTTAAGGTTCCACTTCCAGGGCT
14._NA_33___
TTGTTTTTAAGGTTCCACTTCCAGGGCT
15._NA_33___
TTGTTTTTAAGGTTCCACTTCCAGGGCT
16._NA_33___
TTGTTTTTAA__TTCCACTTCCAGGGCT
17._NA_33___
TTGTTTTTAAGGTTCCACTTCCAGGGCT
18._NA_33___
__GTTT__AC__TT__ACTTCCAGGGCT
19._NA_33___
__GTTT__AC__TT__ACTTCCAGGGCT
20._NA_33___
____TT__AA__TT__ACTTCCAGGGCT
21._NA_33___
__GTTT__AA__TT__ACTTCCAGGGCT
22._NA_33___
__GTTT__AA__TT__ACTTCCAGGGCT
23._NA_33___
__GTTT__AA__TT__ACTTCCAGGGCT
24._NA_33___
__GTTT__AA__TT__ACTTCCAGGGCT
25._NA_33___
__GTTT__AA__TT__ACTTCCAGGGCT
26._NA_33___
__GTTT__AA__TT__ACTTCCAGGGCT
27._NA_33___
__GTTT__AA__TT__ACTTCCAGGGCT
28._NA_33___
__GTTT__AA__TT__ACTTCCAGGGCT
29._NA_33___
__GTTT__AA__TT__ACTTCCAGGGCT
30._NA_33___
__GTTT__AA__TT__ACTTCCAGGGCT
31._NA_33___
__GTTT__AA__TT__ACTTCCAGGGCT
32._NA_33___
__TTTT__CC__TT__ACTTCGAGGGCT
33._NA_33___
__GTTT__AC__TT__CCTTCCAGGGCC
34._NA_33___
__GTTT__AC__TT__CCTTCCAAGGCC
35._NA_33___
__GT__TT______CCCCTTCCAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAAGGACGGGGGGAGGGACTTTTGGGG
1._NA_33___
GGAAGGACGGGGGGAGGGACTTTTGGGG
2._NA_33___
GGAAGGACGGGGGGAGGGACTTTTGGGG
3._NA_33___
GGATGGACCGAGGGAGGGACTTTTGGGG
4._NA_33___
____GGACGGGG______________GG
5._NA_33___
__________AG____________GG__
6._NA_33___
CC__GGACCCGG__CTGGGTAATTGGGG
7._NA_33___
CC__GGACCCGG__CTGGGTAATTGGGG
8._NA_33___
CCTTGGACCCGGGGCTGGGTAATTGGGG
9._NA_33___
CCTTGGACCCGGGGCTGGGTAATTGGGG
10._NA_33___
CCTTGGACCCGGGGCTGGGTAATTGGGG
11._NA_33___
CCTTGGACCCGGGGCTGGGTAATTGGGG
12._NA_33___
CCTTGGACCCGGGGCTGGGTAATTGGGG
13._NA_33___
CCTTGGACCCGGGGCTGGGTAATTGGGG
14._NA_33___
CCTTGGACCCGGGGCTGGGTAATTGGGG
15._NA_33___
CC__GGACCCGG__CTGGGTAATTGGGG
16._NA_33___
CCTTGGACCCGGGGCTGGGTAATTGGGG
17._NA_33___
CC__GGACCCGG__CTGGGTAATTGGGG
18._NA_33___
CC____ACCCGG__CTGG____TT____
19._NA_33___
CC____ACCCGG__CTGG____TT____
20._NA_33___
CC____ACCCGG__CTGG____TT____
21._NA_33___
CC____ACCCGG__CTGG____TT____
22._NA_33___
CC____ACCCGG__CTGG____TT____
23._NA_33___
CC____ACCCGG__CTGG____TT____
24._NA_33___
CC____ACCCGG__CTGG____TT____
25._NA_33___
CC____ACCCGG__CTGG____TT____
26._NA_33___
CC____ACCCGG__CTGG____TT____
27._NA_33___
CC____ACCCGG__CTGG____TT____
28._NA_33___
CC____ACCCGG__CTGG____TT____
29._NA_33___
CC____ACCCGG__CTGG____TT____
30._NA_33___
CC____ACCCGG__CTGG____TT____
31._NA_33___
CC____ACCCGG__CTGG____TT____
32._NA_33___
CC____AACGAG__TTGG____AT____
33._NA_33___
CC____ACCGAG__CTGG____TT____
34._NA_33___
CC____ACGGAG__CTGG____TT____
35._NA_33___
____GGACCGAG__CT________GGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ATGGAGAGGGAACGAGAACCAGCCGGGG
1._NA_33___
ATGGAGAGGGAACGAGAACCAGCCGGGG
2._NA_33___
ATGGAGAGGGAACGAGAACCAGCCGGGG
3._NA_33___
AAGGAGGGGGAAGGAGACCCAGCCGGGG
4._NA_33___
ATCC________CG____________GG
5._NA_33___
__________________CC______GG
6._NA_33___
ATCCAGAGGGAACGCTAACCAGGGGGGG
7._NA_33___
ATCCAGAGGGAACGCTAACCAGGGGGGG
8._NA_33___
ATCCAGAGGGAACG__AACCAGGGGGGG
9._NA_33___
ATCCAGAGGGAACG__AACCAGGGGGGG
10._NA_33___
ATCCAGAGGGAACG__AACCAGGGGGGG
11._NA_33___
ATCCAGAGGGAACG__AACCAGGGGGGG
12._NA_33___
ATCCAGAGGGAACG__AACCAGGGGGGG
13._NA_33___
ATCCAGAGGGAACG__AACCAGGGGGGG
14._NA_33___
ATCCAGAGGGAACG__AACCAGGGGGGG
15._NA_33___
ATCCAGAGGGAACGCTAACCAGGGGGGG
16._NA_33___
ATCCAGAGGGAACG__AACCAGGGGGGG
17._NA_33___
ATCCAGAGGGAACGCTAACCAGGGGGGG
18._NA_33___
AT______GG________CC__GG__GG
19._NA_33___
AT______GG________CC__GG__GG
20._NA_33___
AT______GG________CC__GG__GG
21._NA_33___
AT______GG________CC__GG__GG
22._NA_33___
AT______GG________CC__GG__GG
23._NA_33___
AT______GG________CC__GG__GG
24._NA_33___
AT______GG________CC__GG__GG
25._NA_33___
AT______GG________CC__GG__GG
26._NA_33___
AT______GG________CC__GG__GG
27._NA_33___
AT______GG________CC__GG__GG
28._NA_33___
AT______GG________CC__GG__GG
29._NA_33___
AT______GG________CC__GG__GG
30._NA_33___
AT______GG________CC__GG__GG
31._NA_33___
AT______GG________CC__GG__GG
32._NA_33___
AT______GG________CC__GG__GG
33._NA_33___
AA______GG________CC__GG__GG
34._NA_33___
AA______GG________CC__GG__GG
35._NA_33___
AA__________CC____CC__GG__GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGGGAGAAAACCGGAAAACCAACCCG
1._NA_33___
ACGGGGAGAAAACCGGAAAACCAACCCG
2._NA_33___
ACGGGGAGAAAACCGGAAAACCAACCCG
3._NA_33___
AAGGGGAGAAAACCAGAAAACCAACCCG
4._NA_33___
AC__CC____________TT________
5._NA_33___
AA__CC______GGAG________CCTT
6._NA_33___
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
7._NA_33___
ACCCCCCTAAAAGGGG__TTGGTTCCCG
8._NA_33___
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
9._NA_33___
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
10._NA_33___
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
11._NA_33___
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
12._NA_33___
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
13._NA_33___
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
14._NA_33___
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
15._NA_33___
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
16._NA_33___
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
17._NA_33___
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
18._NA_33___
AC____CT____GG______________
19._NA_33___
AC____CT____GG______________
20._NA_33___
AC____CT____GG______________
21._NA_33___
AC____CT____GG______________
22._NA_33___
AC____CT____GG______________
23._NA_33___
AC____CT____GG______________
24._NA_33___
AC____CT____GG______________
25._NA_33___
AC____CT____GG______________
26._NA_33___
AC____CT____GG______________
27._NA_33___
AC____CT____GG______________
28._NA_33___
AC____CT____GG______________
29._NA_33___
AC____CT____GG______________
30._NA_33___
AC____CT____GG______________
31._NA_33___
AC____CT____GG______________
32._NA_33___
AA____CT____GG______________
33._NA_33___
AA____CT____GG______________
34._NA_33___
AA____CT____GG______________
35._NA_33___
AA__CCCT____GGAGTT____TTCC__
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCAGGGGGCCGGCGGGAAAGAGX_XX_X
1._NA_33___
GGCCAGGGGGCCGGCGGGAAAGAGX_XX_X
2._NA_33___
GGCCAGGGGGCCGGCGGGAAAGAGX_XX_X
3._NA_33___
GGCGGGCGGGCCGGGGGGAAAAAGX_XX_X
4._NA_33___
GGCCCT______________CT__X_XX_X
5._NA_33___
__CG____GG____________AGX_XX_X
6._NA_33___
__GGCTCCGGCCCCCGCCAACTAGX_XX_X
7._NA_33___
__GGCTCCGGCCCCCGCCAACTAGX_XX_X
8._NA_33___
__GGCTCCGGCCCCCGCCAACTAGX_XX_X
9._NA_33___
__GGCTCCGGCCCCCGCCAACTAGX_XX_X
10._NA_33___
__GGCTCCGGCCCCCGCCAACTAGX_XX_X
11._NA_33___
__GGCTCCGGCCCCCGCCAACTAGX_XX_X
12._NA_33___
__GGCTCCGGCCCCCGCCAACTAGX_XX_X
13._NA_33___
__GGCTCCGGCCCCCGCCAACTAGX_XX_X
14._NA_33___
__GGCTCCGGCCCCCGCCAACTAGX_XX_X
15._NA_33___
__GGCTCCGGCCCCCGCCAACTAGX_XX_X
16._NA_33___
__GGCTCCGGCCCCCGCCAACTAGX_XX_X
17._NA_33___
__GGCTCCGGCCCCCGCCAACTAGX_XX_X
18._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
19._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
20._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
21._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
22._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
23._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
24._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
25._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
26._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
27._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
28._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
29._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
30._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
31._NA_33___
__GGCT______CCCG__AACTAGX_XX_X
32._NA_33___
__CCCC______CCGG__AACTAGX_XX_X
33._NA_33___
__CGCC______CCGG__AATTAGX_XX_X
34._NA_33___
__CGCC______CCGG__AATTAGX_XX_X
35._NA_33___
__CGCC____CC__________AGX_XX_X

Input profile: NA_33 MITC-000715

 
USDA-SHRS, United States of America
 Mars, 2018

1._NA_33 GC-01-6-1-6

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: 1 > FP5
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

2._NA_33

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: FP 4
 Mars, 2018

3._NA_33 RUQ_1577

88.4 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._NA_33 NA33

63.6 %
22 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

5._NA_33 RUQ_1577

52.9 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

6._NA_33 GC-01-6-1-06

51.3 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

7._NA_33 GC-01-6-1-06

50.6 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

8._NA_33 GC-01-006-1-06

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

9._NA_33 GC-01-006-1-06

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

10._NA_33 GC-01-006-1-06

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

11._NA_33 GC-01-006-1-06

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

12._NA_33 GC-01-006-1-06

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

13._NA_33 GC-01-006-1-06

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

14._NA_33 GC-01-006-1-06

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

15._NA_33 GC-01-6-1-06

50 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

16._NA_33 GC-01-006-1-06

50 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

17._NA_33 GC-01-6-1-06

49.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

18._NA_33

48.6 %
35 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

19._NA_33

48.6 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

20._NA_33

48.5 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

21._NA_33

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

22._NA_33

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016

23._NA_33

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

24._NA_33

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

25._NA_33

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

26._NA_33

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

27._NA_33

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

28._NA_33

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

29._NA_33

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

30._NA_33

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

31._NA_33

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

32._NA_33

45.7 %
35 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: M6 18, 19
 Dapeng Zhang, 2016

33._NA_33 RUQ_1577

42.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

34._NA_33

42.9 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

35._NA_33 RUQ_1577

40.3 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998