SNP Profiles of GU 243 /H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACGGCCAAGGGGCCAAGGGGAAGGAA
1._GU_133_/C___
CCACGGCCAAGGGGCCAAGGGGAAGGAA
2._GU_133_/C___
____________GG______________
3._GU_133_/C___
__________CC________GG______
4._GU_133_/C___
__________CCGG__AA__________
5._GU_133_/C___
__________CCGG__AA__________
6._GU_133_/C___
__________CCGG__AA__________
7._GU_133_/C___
__________CCGG__AA__________
8._GU_133_/C___
__________CCGG__AA__________
9._GU_133_/C___
__________CCGG__AA__________
10._GU_133_/C___
__________CCGG__AA__________
11._GU_133_/C___
__________CCGG__AA__________
12._GU_133_/C___
__________CCGG__AA__________
13._GU_133_/C___
__________CCGG__AA__________
14._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
15._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
16._GU_133_/C___
__________CCGG__AA__________
17._GU_133_/C___
__________CCGG__AA__________
18._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
19._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
20._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
21._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
22._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
23._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
24._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
25._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
26._GU_133_/C___
CCACGGCCTTCCGGGGAACCGGTTCCTT
27._GU_133_/C___
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAACCGGAAGGAAGGCGGGAAAA
1._GU_133_/C___
AAAAAAAA__GGAAGGAAGGCGGGAAAA
2._GU_133_/C___
__TT____________AA__CG______
3._GU_133_/C___
______________CCAA__CG____TT
4._GU_133_/C___
____TT__________AACCCGGGTTTT
5._GU_133_/C___
____TT______TT__AACCCGGGTTTT
6._GU_133_/C___
__TTTT__CC__TT__AACCCGGGGTTT
7._GU_133_/C___
__TTTT______TT__AACCCGGGTTTT
8._GU_133_/C___
__TTTT______TT__AACCCGGGTTTT
9._GU_133_/C___
__TTTT______TT__AACCCGGGTTTT
10._GU_133_/C___
__TTTT______TT__AACCCGGGTTTT
11._GU_133_/C___
__TTTT______TT__AACCCGGGTTTT
12._GU_133_/C___
__TTTT______TT__AACCCGGGTTTT
13._GU_133_/C___
__TTTT______TT__AACCCGGGTTTT
14._GU_133_/C___
TT__TTTT______CCAACCCGGGTTTT
15._GU_133_/C___
TT__TTTT__GGTTCCAACCCGGGTTTT
16._GU_133_/C___
__TTTT______TT__AACCCGGGTTTT
17._GU_133_/C___
__TTTT______TT__AACCCGGGTTTT
18._GU_133_/C___
TTTTTTTT__GGTTCCAACCCGGGTTTT
19._GU_133_/C___
TTTTTTTT__GGTTCCAACCCGGGTTTT
20._GU_133_/C___
TTTTTTTT__GGTTCCAACCCGGGTTTT
21._GU_133_/C___
TTTTTTTT__GGTTCCAACCCGGGTTTT
22._GU_133_/C___
TTTTTTTT__GGTTCCAACCCGGGTTTT
23._GU_133_/C___
TTTTTTTT__GGTTCCAACCCGGGTTTT
24._GU_133_/C___
TTTTTTTT__GGTTCCAACCCGGGTTTT
25._GU_133_/C___
TTTTTTTT__GGTTCCAACCCGGGTTTT
26._GU_133_/C___
TTTTTTTT__GGTTCCAACCCGGGTTTT
27._GU_133_/C___
__TT__TT______CCAACCCGGGTTTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATGGGG
1._GU_133_/C___
GGTTGGAAGGGGGGGGGG__TTATGGGG
2._GU_133_/C___
__________GG____________GG__
3._GU_133_/C___
____GGAAGGGG______________GG
4._GU_133_/C___
CC____AACC____CCGG____AT____
5._GU_133_/C___
CC____AACCGG__CCGG____AT____
6._GU_133_/C___
CC____AACCGG__CCGG____AT____
7._GU_133_/C___
CC____AACCGG__CCGG____AT____
8._GU_133_/C___
CC____AACCGG__CCGG____AT____
9._GU_133_/C___
CC____AACCGG__CCGG____AT____
10._GU_133_/C___
CC____AACCGG__CCGG____AT____
11._GU_133_/C___
CC____AACCGG__CCGG____AT____
12._GU_133_/C___
CC____AACCGG__CCGG____AT____
13._GU_133_/C___
CC____AACCGG__CCGG____AT____
14._GU_133_/C___
CCAAGGAACC__GGCCGG__AAATGGGG
15._GU_133_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
16._GU_133_/C___
CC____AACC____CCGG____AT____
17._GU_133_/C___
CC______CCGG__CCGG____AT____
18._GU_133_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
19._GU_133_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
20._GU_133_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
21._GU_133_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
22._GU_133_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
23._GU_133_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
24._GU_133_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
25._GU_133_/C___
CCAAGG__CCGGGGCCGGGGAAATGGGG
26._GU_133_/C___
CCAAGGAACC__GGCCGGGGAAATGGGG
27._GU_133_/C___
____GGAACCGG__CC________GGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._GU_133_/C___
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._GU_133_/C___
__________________AA______CC
3._GU_133_/C___
AATT________CC____________CC
4._GU_133_/C___
AA______GG________AA__GG__CC
5._GU_133_/C___
AA______GG________AA__GG__CC
6._GU_133_/C___
AA______GG________AA__GG__CC
7._GU_133_/C___
AA______GG________AA__GG__CC
8._GU_133_/C___
AA______GG________AA__GG__CC
9._GU_133_/C___
AA______GG________AA__GG__CC
10._GU_133_/C___
AA______GG________AA__GG__CC
11._GU_133_/C___
AA______GG________AA__GG__CC
12._GU_133_/C___
AA______GG________AA__GG__CC
13._GU_133_/C___
AA______GG________AA__GG__CC
14._GU_133_/C___
AA__GGGGGGTTCC__CCAAGGGGGGCC
15._GU_133_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
16._GU_133_/C___
AA______GG________AA__GG__CC
17._GU_133_/C___
AA______GG________AA__GG__CC
18._GU_133_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
19._GU_133_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
20._GU_133_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
21._GU_133_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
22._GU_133_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
23._GU_133_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
24._GU_133_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
25._GU_133_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
26._GU_133_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
27._GU_133_/C___
AA__________CC____AA__GG__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGGGGGGGAACCAAAACCAAAAAACC
1._GU_133_/C___
ACGGGGGGGGAACCAAAACCAAAAAACC
2._GU_133_/C___
AC__CC______GGAA________AACC
3._GU_133_/C___
AC__CC____________GG________
4._GU_133_/C___
AC____CC____GG______________
5._GU_133_/C___
AC____CC____GG______________
6._GU_133_/C___
AC____CC____GG______________
7._GU_133_/C___
AC____CC____GG______________
8._GU_133_/C___
AC____CC____GG______________
9._GU_133_/C___
AC____CC____GG______________
10._GU_133_/C___
AC____CC____GG______________
11._GU_133_/C___
AC____CC____GG______________
12._GU_133_/C___
AC____CC____GG______________
13._GU_133_/C___
AC____CC____GG______________
14._GU_133_/C___
ACCCCCCCAAAAGGAATT__TTTTAAGG
15._GU_133_/C___
ACCCCCCCAAAAGGAATTGGTTTTAAGG
16._GU_133_/C___
AC____CC____GG______________
17._GU_133_/C___
AC____CC____GG______________
18._GU_133_/C___
ACCCCCCCAAAAGGAATTGGTTTTAAGG
19._GU_133_/C___
ACCCCCCCAAAAGGAATTGGTTTTAAGG
20._GU_133_/C___
ACCCCCCCAAAAGGAATTGGTTTTAAGG
21._GU_133_/C___
ACCCCCCCAAAAGGAATTGGTTTTAAGG
22._GU_133_/C___
ACCCCCCCAAAAGGAATTGGTTTTAAGG
23._GU_133_/C___
ACCCCCCCAAAAGGAATTGGTTTTAAGG
24._GU_133_/C___
ACCCCCCCAAAAGGAATTGGTTTTAAGG
25._GU_133_/C___
ACCCCCCCAAAAGGAATTGGTTTTAAGG
26._GU_133_/C___
ACCCCCCCAAAAGGAATTGGTTTTAAGG
27._GU_133_/C___
AC__CCCC____GGAATT____TTAA__
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
1._GU_133_/C___
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
2._GU_133_/C___
__GG____GG____________GGX_XX_X
3._GU_133_/C___
GGCCCC______________CC__X_XX_X
4._GU_133_/C___
__GG________CCGG__AACCGGX_XX_X
5._GU_133_/C___
__GGCC______CCGG__AACCGGX_XX_X
6._GU_133_/C___
__GGCC______CCGG__AACCGGX_XX_X
7._GU_133_/C___
__GGCC______CCGG__AACCGGX_XX_X
8._GU_133_/C___
__GGCC______CCGG__AACCGGX_XX_X
9._GU_133_/C___
__GGCC______CCGG__AACCGGX_XX_X
10._GU_133_/C___
__GGCC______CCGG__AACCGGX_XX_X
11._GU_133_/C___
__GGCC______CCGG__AACCGGX_XX_X
12._GU_133_/C___
__GGCC______CCGG__AACCGGX_XX_X
13._GU_133_/C___
__GGCC______CCGG__AACCGGX_XX_X
14._GU_133_/C___
AAGG__CCGGCCCCGGCCAACCGGX_XX_X
15._GU_133_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
16._GU_133_/C___
__GGCC______CCGG__AACCGGX_XX_X
17._GU_133_/C___
__GGCC______CCGG__AACCGGX_XX_X
18._GU_133_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
19._GU_133_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
20._GU_133_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
21._GU_133_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
22._GU_133_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
23._GU_133_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
24._GU_133_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
25._GU_133_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
26._GU_133_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
27._GU_133_/C___
__GGCC____CC__________GGX_XX_X

Input profile: GU_133_/C MITC-000670

 
USDA-SHRS, United States of America
 Mars, 2018

1._GU_133_/C GC-01-116-6-13

identical
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_133_/C RUQ_190

76.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._GU_133_/C RUQ_190

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

4._GU_133_/C

53.3 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

5._GU_133_/C

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

6._GU_133_/C RUQ_190

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016

8._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

9._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

10._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

11._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

12._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

13._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

14._GU_133_/C GC-01-116-6-13

50 %
72 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

15._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._GU_133_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

17._GU_133_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

18._GU_133_/C GC-08-164-4-07

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._GU_133_/C GC-08-164-4-07

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

20._GU_133_/C GC-01-116-6-13

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

21._GU_133_/C GC-01-116-6-13

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

22._GU_133_/C GC-01-116-6-13

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._GU_133_/C GC-08-164-4-07

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._GU_133_/C GC-08-164-4-07

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

25._GU_133_/C GC-08-164-4-07

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

26._GU_133_/C GC-01-116-6-13

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

27._GU_133_/C RUQ_190

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998