SNP Profiles of NA 26   View Data

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 Key

 1234567891011121314
_Input profile
CCACAAACAAAGAGCCAAGGGGAAAGAC
1._RUQ_1230
CCACAAACAAAGAGCCAAGGGGAAAGAC
2._RUQ_1230
____________AG______________
3._RUQ_1230
__________CT________GG______
4._NA_26
__________CTAG__AA__________
5._NA_26
__________CTAG__AA__________
6._NA_26
__________CTAG__AA__________
7._NA_26
__________CTAG__AA__________
8._NA_26
__________CTAG__AA__________
9._RUQ_1230
__________CTAG__AA__________
10._GC-04-021-2-03
CCACAAACTTCTAGGGAACCGGTTCTGT
11._GC-04-021-2-03
CCACAAACTTCTAGGGAACCGGTTCTGT
12._GC-04-021-2-03
CCACAAACTTCTAGGGAACCGGTTCTGT
13._GC-04-021-2-03
CCACAAACTTCTAGGGAACCGGTTCTGT
14._GC-04-021-2-03
CCACAAACTTCTAGGGAACCGGTTCTGT
15._RUQ_1230
__________CT__GG____GG______
16._NA_26
__________CCGG__AT__________
 1516171819202122232425262728
_Input profile
AAAAAAAACCGGAAGGACAACGAACCAG
1._RUQ_1230
AAAAAAAACCGGAAGGACAACGAACCAG
2._RUQ_1230
__TT____________AC__CG______
3._RUQ_1230
______________CCAC__CG____CT
4._NA_26
__TTTT__CC__TT__ACTTCGAAGGCT
5._NA_26
__TTTT__CC__TT__ACTTCGAAGGCT
6._NA_26
__TTTT__CC__TT__ACTTCGAAGGCT
7._NA_26
__TTTT__CC__TT__ACTTCGAAGGCT
8._NA_26
__TTTT__CC__TT__ACTTCGAAGGCT
9._RUQ_1230
__TTTT__CC__TT__ACTTCGAGGGCT
10._GC-04-021-2-03
TTTTTTTTCCGGTTCCACTTCGAAGGCT
11._GC-04-021-2-03
TTTTTTTTCCGGTTCCACTTCGAAGGCT
12._GC-04-021-2-03
TTTTTTTTCCGGTTCCACTTCGAAGGCT
13._GC-04-021-2-03
TTTTTTTTCCGGTTCCACTTCGAAGGCT
14._GC-04-021-2-03
TTTTTTTTCCGGTTCCACTTCGAAGGCT
15._RUQ_1230
__TT__TT______CCACTTCGAAGGCT
16._NA_26
__GTTT__CC__CT__CCTTCGAGTTCT
 2930313233343536373839404142
_Input profile
GGATGGAACGAGGGAGGGCCTTTTGGGG
1._RUQ_1230
GGATGGAACGAGGGAGGGCCTTTTGGGG
2._RUQ_1230
__________AG____________GG__
3._RUQ_1230
____GGAACGAG______________GG
4._NA_26
CC____AACGAG__CTGG____TT____
5._NA_26
CC____AACGAG__CTGG____TT____
6._NA_26
CC____AACGAG__CTGG____TT____
7._NA_26
CC____AACGAG__CTGG____TT____
8._NA_26
CC____AACGAG__CTGG____TT____
9._RUQ_1230
CC____AACGAG__CTGG____TT____
10._GC-04-021-2-03
CCATGGAACGAGGGCTGGGGAATTGGGG
11._GC-04-021-2-03
CCATGGAACGAGGGCTGGGGAATTGGGG
12._GC-04-021-2-03
CCATGGAACGAGGGCTGGGGAATTGGGG
13._GC-04-021-2-03
CCATGGAACGAGGGCTGGGGAATTGGGG
14._GC-04-021-2-03
CCATGGAACGAGGGCTGGGGAATTGGGG
15._RUQ_1230
____GGAACGAG__CT________GGGG
16._NA_26
CC____ACGGAG__CTCG____AT____
 4344454647484950515253545556
_Input profile
ATAGGGGGGGAAGGAGAACCAACCGGGG
1._RUQ_1230
ATAGGGGGGGAAGGAGAACCAACCGGGG
2._RUQ_1230
__________________CC______GG
3._RUQ_1230
ATCT________CC____________GG
4._NA_26
AT______GG________CC__GG__GG
5._NA_26
AT______GG________CC__GG__GG
6._NA_26
AT______GG________CC__GG__GG
7._NA_26
AT______GG________CC__GG__GG
8._NA_26
AT______GG________CC__GG__GG
9._RUQ_1230
AT______GG________CC__GG__GG
10._GC-04-021-2-03
ATCTGGGGGGAACC__AACCAAGGGGGG
11._GC-04-021-2-03
ATCTGGGGGGAACC__AACCAAGGGGGG
12._GC-04-021-2-03
ATCTGGGGGGAACC__AACCAAGGGGGG
13._GC-04-021-2-03
ATCTGGGGGGAACC__AACCAAGGGGGG
14._GC-04-021-2-03
ATCTGGGGGGAACC__AACCAAGGGGGG
15._RUQ_1230
AT__________CC____CC__GG__GG
16._NA_26
AT______AG________AC__GG__GG
 5758596061626364656667686970
_Input profile
ACGGGGGGAAAACCGGAAAAACAACCCC
1._RUQ_1230
ACGGGGGGAAAACCGGAAAAACAACCCC
2._RUQ_1230
AC__CC______GGGG________CCTT
3._RUQ_1230
AC__CC____________TT________
4._NA_26
AC____CC____GG______________
5._NA_26
AC____CC____GG______________
6._NA_26
AC____CC____GG______________
7._NA_26
AC____CC____GG______________
8._NA_26
AC____CC____GG______________
9._RUQ_1230
AC____CC____GG______________
10._GC-04-021-2-03
ACCCCCCCAAAAGGGGTTTTGTTTCCGG
11._GC-04-021-2-03
ACCCCCCCAAAAGGGGTTTTGTTTCCGG
12._GC-04-021-2-03
ACCCCCCCAAAAGGGGTTTTGTTTCCGG
13._GC-04-021-2-03
ACCCCCCCAAAAGGGGTTTTGTTTCCGG
14._GC-04-021-2-03
ACCCCCCCAA__GGGGTTTTGTTTCCGG
15._RUQ_1230
AC__CCCC____GGGGTT____TTCC__
16._NA_26
AC____CC____GG______________
 717273747576777879808182  
_Input profile
GGGGGGGGGGCCAGGGGGAAAGAGX_XX_X
1._RUQ_1230
GGGGGGGGGGCCAGGGGGAAAGAGX_XX_X
2._RUQ_1230
__CC____GG____________AGX_XX_X
3._RUQ_1230
GGGGCC______________CT__X_XX_X
4._NA_26
__CCCC______CTGG__AACTAGX_XX_X
5._NA_26
__CCCC______CTGG__AACTAGX_XX_X
6._NA_26
__CCCC______CTGG__AACTAGX_XX_X
7._NA_26
__CCCC______CTGG__AACTAGX_XX_X
8._NA_26
__CCCC______CTGG__AACTAGX_XX_X
9._RUQ_1230
__CCCC______CTGG__AACTAGX_XX_X
10._GC-04-021-2-03
__CCCCCCGGCCCTGGCCAACTAGX_XX_X
11._GC-04-021-2-03
__CCCCCCGGCCCTGGCCAACTAGX_XX_X
12._GC-04-021-2-03
__CCCCCCGGCCCTGGCCAACTAGX_XX_X
13._GC-04-021-2-03
__CCCCCCGGCCCTGGCCAACTAGX_XX_X
14._GC-04-021-2-03
__CCCCCCGGCCCTGGCCAACTAGX_XX_X
15._RUQ_1230
__CCCC____CC__________AGX_XX_X
16._NA_26
__CCTT______CCGG__AATTAAX_XX_X

Input profile: NA_26 MITC-000034

 
USDA-SHRS, United States of America
 Mars, 2018

1._NA_26 RUQ_1230

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._NA_26 RUQ_1230

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._NA_26 RUQ_1230

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

4._NA_26

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 8 > FP
 Dapeng Zhang, 2016

5._NA_26

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 7 > FP
 Dapeng Zhang, 2016

6._NA_26

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 6 > FP
 Dapeng Zhang, 2016

7._NA_26

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 4 > FP
 Dapeng Zhang, 2016

8._NA_26

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._NA_26 RUQ_1230

52.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._NA_26 GC-04-021-2-03

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

11._NA_26 GC-04-021-2-03

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

12._NA_26 GC-04-021-2-03

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018

13._NA_26 GC-04-021-2-03

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

14._NA_26 GC-04-021-2-03

51.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._NA_26 RUQ_1230

50 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._NA_26

38.6 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E352 T5
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998