SNP Profiles of PA_120[PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACAAAAAAAAGGGGCCAAGGGGAAAGCC
1._PA_120_[PER]_Fld#_172_Plt#_5
ACACAGAAAAGGGGCCAAGGGGAAAGAC
2._RUQ_852
AAACGGACAAGGGGCCAAGGGGAAAGAC
3._PA120[PER]
__________CT________GG______
4._RUQ_852B
____________GG______________
5._RUQ_852
____________GG______________
6._RUQ_852
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAACGGAGGGACAACCAAACAG
1._PA_120_[PER]_Fld#_172_Plt#_5
AAAAGGAGACGGAAGGCCAGCGGGCCGG
2._RUQ_852
AAAAAGGGACGGAAAGCCAGCGGGCCAG
3._PA120[PER]
______________CTAA__GG____TT
4._RUQ_852B
__TT____________CC__CG______
5._RUQ_852
__TT____________CC__CG______
6._RUQ_852
__TT__CC______CTCCCTCGGGGGCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAAGGAAGGAGGGAGGGCCATATGGGG
1._PA_120_[PER]_Fld#_172_Plt#_5
GGTTGGACGGAGGGGGGGCCTTAAGGGG
2._RUQ_852
AGTTGGACGGAAGGGGGGCCTTATGGGG
3._PA120[PER]
____GGACGGAA______________GG
4._RUQ_852B
__________AA____________GG__
5._RUQ_852
__________AA____________GG__
6._RUQ_852
____GGACCCAA__CC________GGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGAGGGATCGAAAACCAGACAGCC
1._PA_120_[PER]_Fld#_172_Plt#_5
AAGGGGGGGGATGGGGCCACAGACAGCG
2._RUQ_852
AAAGAGGGGGATGGGGCCAAAGAAGGGG
3._PA120[PER]
AACT________CC____________CG
4._RUQ_852B
__________________AA______GG
5._RUQ_852
__________________AA______GG
6._RUQ_852
AA__________CC____AA__TT__GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGGGAGAAAACCGGAAAACCAAACCC
1._PA_120_[PER]_Fld#_172_Plt#_5
CCGGAAAAGGAACCAGAAAACCAAAACG
2._RUQ_852
CCGGAAAAAAAACCGGAAAACCAAAACG
3._PA120[PER]
CC__CC____________GT________
4._RUQ_852B
CC__________GGGG________AATT
5._RUQ_852
CC__TT______GGGG________AATT
6._RUQ_852
CC__TTTT____GGGGTT____TTAA__
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGGGGGGGGGCCAGGGGGATAGAAX_XX_X
1._PA_120_[PER]_Fld#_172_Plt#_5
GGCCGGGGGGCCAGGGGGAAAGAGX_XX_X
2._RUQ_852
GGCCGGGGAGCCAACGGGAAAGGGX_XX_X
3._PA120[PER]
AGCGCT______________CT__X_XX_X
4._RUQ_852B
__GG____AG____________GGX_XX_X
5._RUQ_852
__GG____AG____________GGX_XX_X
6._RUQ_852
__GGCC____CC__________GGX_XX_X

Input profile: PA_120_[PER] MITC-000291

 
USDA-SHRS, United States of America
 Mars, 2018

1._PA_120_[PER] PA_120_[PER]_Fld#_172_Plt#_5

72.6 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 172, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

2._PA_120_[PER] RUQ_852

67.1 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._PA_120_[PER] PA120[PER]

40.9 %
22 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

4._PA_120_[PER] RUQ_852B

40.6 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

5._PA_120_[PER] RUQ_852

38.2 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

6._PA_120_[PER] RUQ_852

30.6 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998