SNP Profiles of EET 272 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
CCACAACCAAAGGGCCAAGGGGAAAACC
1._RUQ_6
CCACAACCAAAGGGCCAAGGGGAAAACC
2._GC-03-32-3-11
ACCCAGCCAAGGAGCCAAGGGGAAAAAC
3._RUQ_6
____________GG______________
4._GC-03-032-3-11
CCAC__CCTTCTGGGGAACCGGTTTTGG
5._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
6._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
7._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
8._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
9._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
10._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
11._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
12._EET_272_[ECU]
__________CTGG__AA__________
13._EET_272_[ECU]
__________CTGG__AA__________
14._EET_272_[ECU]
__________CTGG__AA__________
15._EET_272_[ECU]
__________CTGG__AA__________
16._EET_272_[ECU]
__________CTGG__AA__________
17._EET_272_[ECU]
__________CTGG__AA__________
18._EET_272_[ECU]
__________CTGG__AA__________
19._EET_272_[ECU]
__________CTGG__AA__________
20._RUQ_6
__________CT__GG____GG______
21._EET_272_[ECU]
__________CT____AA__________
22._GC-03-032-3-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
23._EET_272_[ECU]
__________CCAG__AA__________
24._GC-03-032-3-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
25._EET_272_[ECU]
__________CCAG__AA__________
 1516171819202122232425262728
_Input profile
AAAAAAAAAAGGAAGGACAAGGAACCAG
1._RUQ_6
AAAAAAAAAAGGAAGGACAAGGAACCAG
2._GC-03-32-3-11
AAAAAGAAACGGAAGGCCGGCCGGCCGG
3._RUQ_6
__TT____________AC__CC______
4._GC-03-032-3-11
TTTTTT__AAGGTTCCACTTCCAAGGCT
5._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
6._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
7._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
8._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
9._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
10._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
11._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
12._EET_272_[ECU]
__TTTT__AA__TT__ACTTCCAAGGCT
13._EET_272_[ECU]
__TTTT__AA__TT__ACTTCCAAGGCT
14._EET_272_[ECU]
__TTTT__AA__TT__ACTTCCAAGGCT
15._EET_272_[ECU]
__TTTT__AA__TT__ACTTCCAAGGCT
16._EET_272_[ECU]
__TTTT__AA__TT__ACTTCCAAGGCT
17._EET_272_[ECU]
__TTTT__AA__TT__ACTTCCAAGGCT
18._EET_272_[ECU]
__TTTT__AA__TT__ACTTCCAAGGCT
19._EET_272_[ECU]
__TTTT__AA__TT__ACTTCCAAGGCT
20._RUQ_6
__TT__TT______CCACTTCCAAGGCT
21._EET_272_[ECU]
__TT____AA__TT__ACTT__AA__CT
22._GC-03-032-3-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
23._EET_272_[ECU]
__TTCT__AC__TT__CCCCGGGGGGCC
24._GC-03-032-3-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
25._EET_272_[ECU]
__TTCT__AC__TT__CCCCGGGGGGCC
 2930313233343536373839404142
_Input profile
GGATGGAAGGAAGGAGGGCCTTTTAGGG
1._RUQ_6
GGATGGAAGGAAGGAGGGCCTTTTAGGG
2._GC-03-32-3-11
AGTTGGACGGAGGGGGGGCCTTATGGGG
3._RUQ_6
__________AA____________AG__
4._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
5._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
6._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
7._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
8._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
9._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
10._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
11._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
12._EET_272_[ECU]
CC____AACCAA__CTGG____TT____
13._EET_272_[ECU]
CC____AACCAA__CTGG____TT____
14._EET_272_[ECU]
CC____AACCAA__CTGG____TT____
15._EET_272_[ECU]
CC____AACCAA__CTGG____TT____
16._EET_272_[ECU]
CC____AACCAA__CTGG____TT____
17._EET_272_[ECU]
CC____AACCAA__CTGG____TT____
18._EET_272_[ECU]
CC____AACCAA__CTGG____TT____
19._EET_272_[ECU]
CC____AACCAA__CTGG____TT____
20._RUQ_6
____GGAACCAA__CT________AGGG
21._EET_272_[ECU]
CT____AACCAA__CTGG__________
22._GC-03-032-3-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
23._EET_272_[ECU]
CT____AACCAG__CCGG____AT____
24._GC-03-032-3-11
CTAAGG__CCAGGGCCGGGGAAATGGGG
25._EET_272_[ECU]
CT______CCAG__CCGG____AT____
 4344454647484950515253545556
_Input profile
AAAGGGGGGGAAGGAAAACCGGACGGGG
1._RUQ_6
AAAGGGGGGGAAGGAAAACCGGACGGGG
2._GC-03-32-3-11
AAAAGGGGGGTTGGGGCCACAAACAGCG
3._RUQ_6
__________________AC______GG
4._GC-03-032-3-11
AACTGGGGGGAACC__AACCGGGTGGGG
5._GC-03-032-3-11
AACTGGGGGGAACC__AACCGGGTGGGG
6._GC-03-032-3-11
AACTGGGGGGAACC__AACCGGGTGGGG
7._GC-03-032-3-11
AACTGGGGGGAACC__AACCGGGTGGGG
8._GC-03-032-3-11
AACTGGGGGGAACC__AACCGGGTGGGG
9._GC-03-032-3-11
AACTGGGGGGAACC__AACCGGGTGGGG
10._GC-03-032-3-11
AACTGGGGGGAACC__AACCGGGTGGGG
11._GC-03-032-3-11
AACTGGGGGGAACC__AACCGGGTGGGG
12._EET_272_[ECU]
AA______GG________CC__GT__GG
13._EET_272_[ECU]
AA______GG________CC__GT__GG
14._EET_272_[ECU]
AA______GG________CC__GT__GG
15._EET_272_[ECU]
AA______GG________CC__GT__GG
16._EET_272_[ECU]
AA______GG________CC__GT__GG
17._EET_272_[ECU]
AA______GG________CC__GT__GG
18._EET_272_[ECU]
AA______GG________CC__GT__GG
19._EET_272_[ECU]
AA______GG________CC__GT__GG
20._RUQ_6
AA__________CC____CC__GT__GG
21._EET_272_[ECU]
________AG____________GT____
22._GC-03-032-3-11
AATTGGGGGGTTCC__CCACAAGTAGCG
23._EET_272_[ECU]
AA______GG________AC__GT__CG
24._GC-03-032-3-11
AATTGGGGGGTTCC__CCACAAGTAGCG
25._EET_272_[ECU]
AA______GG________AC__GT__CG
 5758596061626364656667686970
_Input profile
AAGGGGAGAAAACCGGAAAACCAAACCC
1._RUQ_6
AAGGGGAGAAAACCGGAAAACCAAACCC
2._GC-03-32-3-11
CCGGAGAAAGAACCAGAAAACCAAAACG
3._RUQ_6
____CC______GGGG________ACTT
4._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
5._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
6._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
7._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
8._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
9._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
10._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
11._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
12._EET_272_[ECU]
AA____CT____GG______________
13._EET_272_[ECU]
AA____CT____GG______________
14._EET_272_[ECU]
AA____CT____GG______________
15._EET_272_[ECU]
AA____CT____GG______________
16._EET_272_[ECU]
AA____CT____GG______________
17._EET_272_[ECU]
AA____CT____GG______________
18._EET_272_[ECU]
AA____CT____GG______________
19._EET_272_[ECU]
AA____CT____GG______________
20._RUQ_6
AA__CCCT____GGGGTT____TTAC__
21._EET_272_[ECU]
AA____CT____GG______________
22._GC-03-032-3-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
23._EET_272_[ECU]
CC____TT____GG______________
24._GC-03-032-3-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
25._EET_272_[ECU]
CC____TT____GG______________
 717273747576777879808182  
_Input profile
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
1._RUQ_6
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
2._GC-03-32-3-11
GGCCGGGGGGCCAGCCGGAAAGAGX_XX_X
3._RUQ_6
__CC____GG____________AGX_XX_X
4._GC-03-032-3-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
5._GC-03-032-3-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
6._GC-03-032-3-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
7._GC-03-032-3-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
8._GC-03-032-3-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
9._GC-03-032-3-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
10._GC-03-032-3-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
11._GC-03-032-3-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
12._EET_272_[ECU]
__CCCT______CTGG__AACTAGX_XX_X
13._EET_272_[ECU]
__CCCT______CTGG__AACTAGX_XX_X
14._EET_272_[ECU]
__CCCT______CTGG__AACTAGX_XX_X
15._EET_272_[ECU]
__CCCT______CTGG__AACTAGX_XX_X
16._EET_272_[ECU]
__CCCT______CTGG__AACTAGX_XX_X
17._EET_272_[ECU]
__CCCT______CTGG__AACTAGX_XX_X
18._EET_272_[ECU]
__CCCT______CTGG__AACTAGX_XX_X
19._EET_272_[ECU]
__CCCT______CTGG__AACTAGX_XX_X
20._RUQ_6
__CCTT____CC__________AGX_XX_X
21._EET_272_[ECU]
____CT______CTGG__AACTAGX_XX_X
22._GC-03-032-3-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
23._EET_272_[ECU]
__GGCC______CTCC__AACTAGX_XX_X
24._GC-03-032-3-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
25._EET_272_[ECU]
__GGCC______CTCC__AACTAGX_XX_X

Input profile: EET_272_[ECU] MITC-000381

 
USDA-SHRS, United States of America
 Mars, 2018

1._EET_272_[ECU] RUQ_6

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._EET_272_[ECU] GC-03-32-3-11

70.7 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

3._EET_272_[ECU] RUQ_6

59.4 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._EET_272_[ECU] GC-03-032-3-11

50 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

7._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

8._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

12._EET_272_[ECU]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

13._EET_272_[ECU]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._EET_272_[ECU]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

15._EET_272_[ECU]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

16._EET_272_[ECU]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

17._EET_272_[ECU]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

18._EET_272_[ECU]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

19._EET_272_[ECU]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

20._EET_272_[ECU] RUQ_6

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_272_[ECU]

44.2 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

22._EET_272_[ECU] GC-03-032-3-11

36.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

23._EET_272_[ECU]

35.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

24._EET_272_[ECU] GC-03-032-3-11

35.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

25._EET_272_[ECU]

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998