SNP Profiles of LCT EEN 90   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCGGAAAAGGGGCCATAAGGGGAAAA
1._UF_712___
AACCGGAAAAGGGGCCATAAGGGGAAAA
2._UF_712___
AACCGGAAAAGGGGCCATAAGGGGAAAA
3._UF_712___
____________GG______________
4._UF_712___
AACCGGAATTCCGGGGTTTTGGCCTTTT
5._UF_712___
AACCGGAATTCCGGGGTTTTGGCCTTTT
6._UF_712___
AACCGGAATTCCGGGGTTTTGGCCTTTT
7._UF_712___
AACCGGAATTCCGGGGTTTTGGCCTTTT
8._UF_712___
__________CCGG__AT__________
9._UF_712___
__________CCGG__AT__________
10._UF_712___
__________CCGG__AT__________
11._UF_712___
__________CCGG__TT__________
12._UF_712___
__________CCGG__TT__________
13._UF_712___
__________CCGG__TT__________
14._UF_712___
__________CCGG__TT__________
15._UF_712___
__________CC__GG____GG______
16._UF_712___
__________CC__GG____GG______
17._UF_712___
__________CCGG__AT__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCGGGGGGCCAAGGGGCCAA
1._UF_712___
AACCAAGGCCGGGGGGCCAAGGGGCCAA
2._UF_712___
AACCAAGGCCGGGGGGCCAAGGGGCCAA
3._UF_712___
__GG____________CC__CC______
4._UF_712___
TTGGTT____GGCCCCCCTT__GGGGTT
5._UF_712___
TTGGTT____GGCCCCCCTTCCGGGGTT
6._UF_712___
TTGGTT____GGCCCCCCTTCCGGGGTT
7._UF_712___
TTGGTT____GGCCCCCCTTCCGGGGTT
8._UF_712___
__GGTT__CC__CC__CCTTCCGGGGTT
9._UF_712___
__GGTT__CC__CC__CCTTCCGGGGTT
10._UF_712___
__GGTT__CC__CC__CCTTCCGGGGTT
11._UF_712___
__GGTT______CC__CCTT__GGGGTT
12._UF_712___
__GGTT______CC__CCTTCCGGGGTT
13._UF_712___
__GGTT______CC__CCTTCCGGGGTT
14._UF_712___
__GGTT______CC__CCTTCCGGGGTT
15._UF_712___
__GG__CC______CCCCTTCCGGGGTT
16._UF_712___
__GG__CC______CCCCTTCCGGGGTT
17._UF_712___
__GGTT__CC__CC__CCTTCCGGGGTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGCCGGAAGGGGCCCCAAAAAAGG
1._UF_712___
GGTTGGCCGGAAGGGGCCCCAAAAAAGG
2._UF_712___
GGTTGGCCGGAAGGGGCCCCAAAAAAGG
3._UF_712___
__________AA____________AA__
4._UF_712___
CCAAGGCCCCAAGGCCCCGGTTAAAAGG
5._UF_712___
CCAAGGCCCCAAGGCCCCGGTTAAAAGG
6._UF_712___
CCAAGGCCCCAAGGCCCCGGTTAAAAGG
7._UF_712___
CCAAGGCCCCAAGGCCCCGGTTAAAAGG
8._UF_712___
CC____CCCCAA__CCCC____AA____
9._UF_712___
CC____CCCCAA__CCCC____AA____
10._UF_712___
CC____CCCCAA__CCCC____AA____
11._UF_712___
CC____CCCCAA__CCCC____AA____
12._UF_712___
CC____CCCCAA__CCCC____AA____
13._UF_712___
CC____CCCCAA__CCCC____AA____
14._UF_712___
CC____CCCCAA__CCCC____AA____
15._UF_712___
____GGCCCCAA__CC________AAGG
16._UF_712___
____GGCCCCAA__CC________AAGG
17._UF_712___
CC____CCCC____CCCC____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTGGAAAAAAAAGGGGAAAAAACCGGGG
1._UF_712___
TTGGAAAAAAAAGGGGAAAAAACCGGGG
2._UF_712___
TTGGAAAAAAAAGGGGAAAAAACCGGGG
3._UF_712___
__________________AA______GG
4._UF_712___
TTCCAAAAAAAACC__AAAAAAGGGGGG
5._UF_712___
TTCCAAAAAAAACC__AAAAAAGGGGGG
6._UF_712___
TTCCAAAAAAAACC__AAAAAAGGGGGG
7._UF_712___
TTCCAAAAAAAACC__AAAAAAGGGGGG
8._UF_712___
TT______AA________AA__GG__GG
9._UF_712___
TT______AA________AA__GG__GG
10._UF_712___
TT______AA________AA__GG__GG
11._UF_712___
TT______AA________AA__GG__GG
12._UF_712___
TT______AA________AA__GG__GG
13._UF_712___
TT______AA________AA__GG__GG
14._UF_712___
TT______AA________AA__GG__GG
15._UF_712___
TT__________CC____AA__GG__GG
16._UF_712___
TT__________CC____AA__GG__GG
17._UF_712___
TT______AA________AA__GG__GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGGGAGAAAACCAAAAAAAAAACCGG
1._UF_712___
CCGGGGAGAAAACCAAAAAAAAAACCGG
2._UF_712___
CCGGGGAGAAAACCAAAAAAAAAACCGG
3._UF_712___
____CC______GGAA________CCCC
4._UF_712___
CCCCCCCTAAAAGGAATTTTTTTTCCCC
5._UF_712___
CCCCCCCTAAAAGGAATTTTTTTTCCCC
6._UF_712___
CCCCCCCTAAAAGGAATTTTTTTTCCCC
7._UF_712___
CCCCCCCTAAAAGGAATTTTTTTTCCCC
8._UF_712___
CC____CT____GG______________
9._UF_712___
CC____CT____GG______________
10._UF_712___
CC____CT____GG______________
11._UF_712___
CC____CT____GG______________
12._UF_712___
CC____CT____GG______________
13._UF_712___
CC____CT____GG______________
14._UF_712___
CC____CT____GG______________
15._UF_712___
CC__CCCT____GGAATT____TTCC__
16._UF_712___
CC__CCCT____GGAATT____TTCC__
17._UF_712___
TT____CT____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AACCAACCGGCCGGGGGGTTAAAAX_XX_X
1._UF_712___
AACCAACCGGCCGGGGGGTTAAAAX_XX_X
2._UF_712___
AACCAACCGGCCGGGGGGTTAAAAX_XX_X
3._UF_712___
__GG____GG____________AAX_XX_X
4._UF_712___
AAGGTTGGGGCCCCGGCCTTTTAAX_XX_X
5._UF_712___
AAGGTTGGGGCCCCGGCCTTTTAAX_XX_X
6._UF_712___
AAGGTTGGGGCCCCGGCCTTTTAAX_XX_X
7._UF_712___
AAGGTTGGGGCCCCGGCCTTTTAAX_XX_X
8._UF_712___
__GGTT______CCGG__TTTTAAX_XX_X
9._UF_712___
__GGTT______CCGG__TTTTAAX_XX_X
10._UF_712___
__GGTT______CC____TTTTAAX_XX_X
11._UF_712___
__GGTT______CCGG__TTTTAAX_XX_X
12._UF_712___
__GGTT______CCGG__TTTTAAX_XX_X
13._UF_712___
__GGTT______CCGG__TTTTAAX_XX_X
14._UF_712___
__GGTT______CCGG__TTTTAAX_XX_X
15._UF_712___
__GGTT____CC__________AAX_XX_X
16._UF_712___
__GGTT____CC__________AAX_XX_X
17._UF_712___
__GGTT______CC____TTTTAAX_XX_X

Input profile: UF_712 MITC-000350

 
USDA-SHRS, United States of America
 Mars, 2018

1._UF_712 RUQ_1683

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._UF_712 MITC-000039

identical
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

3._UF_712 RUQ_1683

62.5 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

4._UF_712 GC-01-089-5-06

49.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._UF_712 GC-01-089-5-06

48.7 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._UF_712 GC-01-089-5-06

48.7 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._UF_712 GC-01-089-5-06

48.7 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._UF_712 RUQ_1638

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._UF_712 RUQ_1638

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._UF_712

47.1 %
34 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

11._UF_712

47 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1506 3
 Dapeng Zhang, 2016

12._UF_712

45.6 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1506 1
 Dapeng Zhang, 2016

13._UF_712

45.6 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1506 2
 Dapeng Zhang, 2016

14._UF_712

45.6 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1506 4
 Dapeng Zhang, 2016

15._UF_712 RUQ_1683

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._UF_712 RUQ_1638

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._UF_712

42.4 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 39 34_36
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998