SNP Profiles of AMAZ 3 /2   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTTTCCGGAGGGTTAAGTCCCCGGCCAA
1._RUQ_91b
TTTTCCGGAGGGTTAAGTCCCCGGCCAA
2._AMAZ_3_/2
____CC______TT____CC__GG____
3._AMAZ_3_/2
____CC______TT____CC__GG____
4._AMAZ_3_/2
____CC______TT____CC__GG____
5._AMAZ_3_/2
____CC______TT____CC__GG____
6._AMAZ_3_/2
____CC______TT____CC__GG____
7._AMAZ_3_/2
____CC______TT____CC__GG____
8._AMAZ_3_/2
____CC______TT____CC__GG____
9._AMAZ_3_/2
____CC______TT____CC__GG____
10._AMAZ_3_/2
____CC______TT____CC__GG____
11._AMAZ_3_/2
____CC______TT____CC__GG____
12._RUQ_91
____CC______TT____CC__GG____
13._AMAZ_3_/2
____CC______TT____CC__GG____
14._RUQ_91
____CC______TT______________
15._GC-03-022-2-11
____CC______TT____CC__GG____
16._GC-03-022-2-11
____CC______TT____CC__GG____
17._GC-03-022-2-11
____CC______TT____CC__GG____
18._GC-03-022-2-11
____CC______TT____CC__GG____
19._GC-03-022-2-11
____CC______TT____CC__GG____
20._GC-03-022-2-11
____CC______TT____CC__GG____
21._GC-03-022-2-11
____CC______TT____CC__GG____
22._GC-03-022-2-11
____CC______TT____CC__GG____
23._GC-03-022-2-11
____CC______TT____CC__GG____
24._GC-03-022-2-11
____CC______TT____CC__GG____
25._RUQ_91
____GG______AA________GG____
26._AMAZ_3_/2
____CC______GT____CC__AG____
27._AMAZ_3_/2
____CC______GT____CC__AG____
28._AMAZ_3_/2
____CC______GT____CC__AG____
29._AMAZ_3_/2
____CC______GT____CC__AG____
30._GC-03-022-2-11
____CC______GT____CC__AG____
31._GC-03-022-2-11
____CC______GT____CC__AG____
32._GC-03-022-2-11
____CC______GT____CC__AG____
33._GC-03-022-2-11
____CC______GT____CC__AG____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCCCAACCGGCGTTAAAATTCCAAGTTT
1._RUQ_91b
CCCCAACCGGCGTTAAAATTCCAAGTTT
2._AMAZ_3_/2
____AA____CG____________GT__
3._AMAZ_3_/2
____AA____CG____________GT__
4._AMAZ_3_/2
____AA____CG____________GT__
5._AMAZ_3_/2
____AA____CG____________GT__
6._AMAZ_3_/2
____AA____CG____________GT__
7._AMAZ_3_/2
____AA____CG____________GT__
8._AMAZ_3_/2
____AA____CG____________GT__
9._AMAZ_3_/2
____AA____CG____________GT__
10._AMAZ_3_/2
____AA____CG____________GT__
11._AMAZ_3_/2
____AA____CG____________GT__
12._RUQ_91
____AA____CG____________GT__
13._AMAZ_3_/2
____AA____CG____________GT__
14._RUQ_91
____AA__________________GTTT
15._GC-03-022-2-11
__CCAA__GGCGCG__AA____AAGTTT
16._GC-03-022-2-11
__CCAA__GGCGCG__AA____AAGTTT
17._GC-03-022-2-11
__CCAA__GGCGCG__AA____AAGTTT
18._GC-03-022-2-11
__CCAA__GGCGCG__AA____AAGTTT
19._GC-03-022-2-11
__CCAA__GGCGCG__AA____AAGTTT
20._GC-03-022-2-11
__CCAA__GGCGCG__AA____AAGTTT
21._GC-03-022-2-11
__CCAA__GGCGCG__AA____AAGTTT
22._GC-03-022-2-11
__CCAA__GGCGCG__AA____AAGTTT
23._GC-03-022-2-11
__CCAA__GGCGCG__AA____AAGTTT
24._GC-03-022-2-11
__CCAA__GGCGCG__AA____AAGTTT
25._RUQ_91
____AA__GGCGCG__AA____AAAC__
26._AMAZ_3_/2
____AG____GG____________GG__
27._AMAZ_3_/2
____AG____GG____________GG__
28._AMAZ_3_/2
____AG____GG____________GG__
29._AMAZ_3_/2
____AG____GG____________GG__
30._GC-03-022-2-11
__CCAG__GGGGCG__CC____GGGGCT
31._GC-03-022-2-11
__CCAG__GGGGCG__CC____GGGGCT
32._GC-03-022-2-11
__CCAG__GGGGCG__CC____GGGGCT
33._GC-03-022-2-11
__CCAG__GGGGCG__CC____GGGGCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACCAATTTTAAATAACCCCAACTAA
1._RUQ_91b
CG__CCAATTTTAAATAACCCCAACTAA
2._AMAZ_3_/2
__AA________AA____CC________
3._AMAZ_3_/2
__AA________AA____CC________
4._AMAZ_3_/2
__AA________AA____CC________
5._AMAZ_3_/2
__AA________AA____CC________
6._AMAZ_3_/2
__AA________AA____CC________
7._AMAZ_3_/2
__AA________AA____CC________
8._AMAZ_3_/2
__AA________AA____CC________
9._AMAZ_3_/2
__AA________AA____CC________
10._AMAZ_3_/2
__AA________AA____CC________
11._AMAZ_3_/2
__AA________AA____CC________
12._RUQ_91
__AA________AA____CC________
13._AMAZ_3_/2
__AA________AA____CC________
14._RUQ_91
__________TTAA____CC________
15._GC-03-022-2-11
__AA______TTAA____CC________
16._GC-03-022-2-11
__AA______TTAA____CC________
17._GC-03-022-2-11
__AA______TTAA____CC________
18._GC-03-022-2-11
__AA______TTAA____CC________
19._GC-03-022-2-11
__AA______TTAA____CC________
20._GC-03-022-2-11
__AA______TTAA____CC________
21._GC-03-022-2-11
__AA______TTAA____CC________
22._GC-03-022-2-11
__AA______TTAA____CC________
23._GC-03-022-2-11
__AA______TTAA____CC________
24._GC-03-022-2-11
__AA______TTAA____CC________
25._RUQ_91
__________AAAA____CC________
26._AMAZ_3_/2
__AA________AC____CC________
27._AMAZ_3_/2
__AA________AC____CC________
28._AMAZ_3_/2
__AA________AC____CC________
29._AMAZ_3_/2
____________AC____CC________
30._GC-03-022-2-11
__AA______CCAC____CC________
31._GC-03-022-2-11
__AA______CCAC____CC________
32._GC-03-022-2-11
__AA______CCAC____CC________
33._GC-03-022-2-11
__________CCAC____CC________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGAATTAATTAGTTAAAATTGGCCTTAC
1._RUQ_91b
GGAATTAATTAGTTAAAATTGGCCTTAC
2._AMAZ_3_/2
______AA______AA____________
3._AMAZ_3_/2
______AA______AA____________
4._AMAZ_3_/2
______AA______AA____________
5._AMAZ_3_/2
______AA______AA____________
6._AMAZ_3_/2
______AA______AA____________
7._AMAZ_3_/2
______AA______AA____________
8._AMAZ_3_/2
______AA______AA____________
9._AMAZ_3_/2
______AA______AA____________
10._AMAZ_3_/2
______AA______AA____________
11._AMAZ_3_/2
______AA______AA____________
12._RUQ_91
______AA______AA____________
13._AMAZ_3_/2
______AA______AA____________
14._RUQ_91
GG____AA______AA____________
15._GC-03-022-2-11
GG____AA______AA____________
16._GC-03-022-2-11
GG____AA______AA____________
17._GC-03-022-2-11
GG____AA______AA____________
18._GC-03-022-2-11
GG____AA______AA____________
19._GC-03-022-2-11
GG____AA______AA____________
20._GC-03-022-2-11
GG____AA______AA____________
21._GC-03-022-2-11
GG____AA______AA____________
22._GC-03-022-2-11
GG____AA______AA____________
23._GC-03-022-2-11
GG____AA______AA____________
24._GC-03-022-2-11
GG____AA______AA____________
25._RUQ_91
GG____AA______AA____________
26._AMAZ_3_/2
______GG______AC____________
27._AMAZ_3_/2
______GG______AC____________
28._AMAZ_3_/2
______GG______AC____________
29._AMAZ_3_/2
______GG______AC____________
30._GC-03-022-2-11
GG____GG______AC____________
31._GC-03-022-2-11
GG____GG______AC____________
32._GC-03-022-2-11
GG____GG______AC____________
33._GC-03-022-2-11
GG____GG______AC____________
 57              
_Input profile
CTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_91b
CTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RUQ_91
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._RUQ_91
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._RUQ_91
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: AMAZ_3_/2 RUQ_91

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._AMAZ_3_/2 RUQ_91b

identical
56 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

3._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

4._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

5._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

6._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

7._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

8._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

9._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

10._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

12._AMAZ_3_/2 RUQ_91

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._AMAZ_3_/2

identical
12 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

14._AMAZ_3_/2 RUQ_91

identical
11 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

17._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

18._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

21._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

22._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

23._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

24._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

25._AMAZ_3_/2 RUQ_91

68.8 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._AMAZ_3_/2

62.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

27._AMAZ_3_/2

62.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016

28._AMAZ_3_/2

62.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

29._AMAZ_3_/2

59.1 %
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

30._AMAZ_3_/2 GC-03-022-2-11

55 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

31._AMAZ_3_/2 GC-03-022-2-11

55 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

32._AMAZ_3_/2 GC-03-022-2-11

55 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

33._AMAZ_3_/2 GC-03-022-2-11

52.6 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1275 7TcSNP1253 8TcSNP1230 9TcSNP1205 10TcSNP1144
11TcSNP1112 12TcSNP1062 13TcSNP1053 14TcSNP1019 15TcSNP1010
16TcSNP999 17TcSNP998 18TcSNP945 19TcSNP899 20TcSNP872
21TcSNP836 22TcSNP835 23TcSNP823 24TcSNP800 25TcSNP739
26TcSNP731 27TcSNP723 28TcSNP702 29TcSNP660 30TcSNP645
31TcSNP644 32TcSNP642 33TcSNP640 34TcSNP602 35TcSNP591
36TcSNP589 37TcSNP546 38TcSNP529 39TcSNP522 40TcSNP519
41TcSNP421 42TcSNP363 43TcSNP329 44TcSNP305 45TcSNP290
46TcSNP230 47TcSNP194 48TcSNP189 49TcSNP176 50TcSNP144
51TcSNP143 52TcSNP131 53TcSNP52 54TcSNP49 55TcSNP33
56TcSNP19 57TcSNP13