SNP Profiles of ICS 43   View Data

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 Key

 1234567891011121314
_Input profile
AATTGGGGAATTGGTTAATTCCCTGGTT
1._GC-01-051-3-06
____CC________TT____CC__GG__
2._GC-01-051-3-06
____CC________TT____CC__GG__
3._GC-01-051-3-06
____CC________TT____CC__GG__
4._GC-01-051-3-06
____CC________TT____CC__GG__
5._GC-01-051-3-06
____CC________TT____CC__GG__
6._GC-01-051-3-06
____CC________TT____CC__GG__
7._GC-01-051-3-06
____CC________TT____CC__GG__
8._GC-01-051-3-06
____CC________TT____CC__GG__
9._GC-01-051-3-06
____CC________TT____CC__GG__
10._GC-01-051-3-06
____CC________TT____CC__GG__
11._ICS_43
____CC________TT____CC__GG__
12._ICS_43
____CC________TT____CC__GG__
13._ICS_43
____CC________TT____CC__GG__
14._ICS_43
____CC________TT____CC__GG__
15._ICS_43
____CC________TT____CC__GG__
16._ICS_43
____CC________TT____CC__GG__
17._ICS_43
____CC________TT____CC__GG__
18._ICS_43
____CC________TT____CC__GG__
19._ICS_43
____CC________TT____CC__GG__
20._ICS_43
____CC________TT____CC__GG__
21._RUQ_144
____GG________GT____CT______
22._RUQ_144
ATCTGGGGGGTTGGGTACTTCTTTAACC
23._ICS_43
____GG________GT____CT__AA__
24._RUQ_144
____GG________GT____________
25._ICS43
____CC______________________
26._RUQ_144
____CC________AA________AA__
27._ICS_43_Fld#_164_Plt#_1
____CC________AA________AA__
 1516171819202122232425262728
_Input profile
AACTCCAACCGGGGCCAAAATTCTAAGG
1._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
2._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
3._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
4._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
5._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
6._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
7._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
8._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
9._GC-01-051-3-06
______GG__GGGGGG__AA____AAGG
10._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
11._ICS_43
______GG____GG____________GG
12._ICS_43
______GG____GG____________GG
13._ICS_43
______GG____GG____________GG
14._ICS_43
______GG____GG____________GG
15._ICS_43
______GG____GG____________GG
16._ICS_43
______GG____GG____________GG
17._ICS_43
______GG____GG____________GG
18._ICS_43
______GG____GG____________GG
19._ICS_43
______GG____GG____________GG
20._ICS_43
______GG____GG____________GG
21._RUQ_144
______AA____GG____________GT
22._RUQ_144
ATCTCTAACGGGGGTTAACCCTCTAGGT
23._ICS_43
______AA____GG____________GT
24._RUQ_144
______AA____GG____CC____AGGT
25._ICS43
____________CC______________
26._RUQ_144
______AA__GGCCCC__CC____AGAC
27._ICS_43_Fld#_164_Plt#_1
______AA__GGCCCC__CC____AGAC
 2930313233343536373839404142
_Input profile
CCCCAGCCAGCTCCCCATCCAGAACTCC
1._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
2._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
3._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
4._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
5._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
6._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
7._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
8._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
9._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
10._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
11._ICS_43
____AA________CC__CC__AA____
12._ICS_43
____AA________CC__CC__AA____
13._ICS_43
____AA________CC__CC__AA____
14._ICS_43
____AA________CC__CC__AA____
15._ICS_43
____AA________CC__CC__AA____
16._ICS_43
____AA________CC__CC__AA____
17._ICS_43
____AA________CC__CC__AA____
18._ICS_43
____AA________CC__CC__AA____
19._ICS_43
____AA________CC__CC__AA____
20._ICS_43
____AA________CC__CC__AA____
21._RUQ_144
____AG________AA__CC__CC____
22._RUQ_144
CCCGAGCGAGTTCTAAATCCAGCCCTCC
23._ICS_43
____AG________AA__CC__CC____
24._RUQ_144
CC__________CTAA__CC__CC____
25._ICS43
____________CTAA__CC________
26._RUQ_144
____________AGAA__CC__CC____
27._ICS_43_Fld#_164_Plt#_1
____________AGAA__CC__CC____
 4344454647484950515253545556
_Input profile
TTAAGGAACCGGGGGGCCAAAATTGGCC
1._GC-01-051-3-06
____GG____GG______AA________
2._GC-01-051-3-06
____GG____GG______AA________
3._GC-01-051-3-06
____GG____GG______AA________
4._GC-01-051-3-06
____GG____GG______AA________
5._GC-01-051-3-06
____GG____GG______AA________
6._GC-01-051-3-06
____GG____GG______AA________
7._GC-01-051-3-06
____GG____GG______AA________
8._GC-01-051-3-06
____GG____GG______AA________
9._GC-01-051-3-06
____GG____GG______AA________
10._GC-01-051-3-06
____GG____________AA________
11._ICS_43
__________GG______AA________
12._ICS_43
__________GG______AA________
13._ICS_43
__________GG______AA________
14._ICS_43
__________GG______AA________
15._ICS_43
__________GG______AA________
16._ICS_43
__________GG______AA________
17._ICS_43
__________GG______AA________
18._ICS_43
__________GG______AA________
19._ICS_43
__________GG______AA________
20._ICS_43
__________________AA________
21._RUQ_144
__________GG______AC________
22._RUQ_144
CCACAGAATTGGTTAGCTACATGTGGCC
23._ICS_43
__________GG______AC________
24._RUQ_144
____AG____GG______AC________
25._ICS43
__________GG______AC________
26._RUQ_144
____AG____GG______AC________
27._ICS_43_Fld#_164_Plt#_1
____AG____GG______AC________
 575859           
_Input profile
TTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._RUQ_144
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._RUQ_144
CTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._RUQ_144
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._ICS43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._RUQ_144
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._ICS_43_Fld#_164_Plt#_1
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_219_/F RUQ_768

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._ICS_43 GC-01-051-3-06

83.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

2._ICS_43 GC-01-051-3-06

83.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

3._ICS_43 GC-01-051-3-06

83.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._ICS_43 GC-01-051-3-06

83.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._ICS_43 GC-01-051-3-06

83.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._ICS_43 GC-01-051-3-06

83.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

7._ICS_43 GC-01-051-3-06

83.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

8._ICS_43 GC-01-051-3-06

83.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._ICS_43 GC-01-051-3-06

82.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

10._ICS_43 GC-01-051-3-06

82.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._ICS_43

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

12._ICS_43

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._ICS_43

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

14._ICS_43

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

15._ICS_43

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

16._ICS_43

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

17._ICS_43

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

18._ICS_43

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

19._ICS_43

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

20._ICS_43

79.2 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

21._ICS_43 RUQ_144

66.7 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._ICS_43 RUQ_144

62.7 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._ICS_43

61.5 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

24._ICS_43 RUQ_144

60 %
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._ICS_43 ICS43

42.9 %
7 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

26._ICS_43 RUQ_144

38.2 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

27._ICS_43 ICS_43_Fld#_164_Plt#_1

38.2 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13