SNP Profiles of GU 114 /P   View Data

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 Key

 1234567891011121314
_Input profile
TTCCTTCCGGTTAAAACCGGGGGGCCAA
1._RUQ_813
_______AA___GG__
2._RUQ_813
_______AA___GG__
3._GU_114_/P
_______AA___GG__
4._GU_114_/P
_______AA___GG__
5._GU_114_/P
_______AA___GG__
6._GU_114_/P
_______AA___GG__
7._GU_114_/P
_______AA___GG__
8._GU_114_/P
_______AA___GG__
9._GU_114_/P
_______AA___GG__
10._GU_114_/P
_______AA___GG__
11._RUQ_813
_______AA___GG__
12._RUQ_813
_______AA___GG__
 1516171819202122232425262728
_Input profile
GGAACTCCCTAAAGCCATCCCCCTAGCC
1._RUQ_813
GG____AA_CC_CCCC___
2._RUQ_813
_____AA_CC_CC____
3._GU_114_/P
_____AA_CC_CC____
4._GU_114_/P
_____AA_CC_CC____
5._GU_114_/P
_____AA_CC_CC____
6._GU_114_/P
_____AA_CC_CC____
7._GU_114_/P
_____AA_CC_CC____
8._GU_114_/P
_____AA_CC_CC____
9._GU_114_/P
_____AA_CC_CC____
10._GU_114_/P
_____AA_CC_CC____
11._RUQ_813
_______CC_CCCC___
12._RUQ_813
GG____AA_CC_CCGG___
 2930313233343536373839404142
_Input profile
AACCCCGGAATTTTAAAACCGGGGCCAG
1._RUQ_813
__CCGGAA__AA__GG-_AG
2._RUQ_813
AA__GG______GG__AG
3._GU_114_/P
AA__GG______GG__AG
4._GU_114_/P
AG__GG______GG__AG
5._GU_114_/P
AG__GG______GG__AG
6._GU_114_/P
AG__GG______GG__AG
7._GU_114_/P
AG__GG______GG__AG
8._GU_114_/P
AG__GG______GG___
9._GU_114_/P
AG__GG______GG__AG
10._GU_114_/P
AG__GG______GG__AG
11._RUQ_813
__________CC___
12._RUQ_813
___CCAA__AA_CCCCGG_AG
 4344454647484950515253545556
_Input profile
CCCCAACCGGTTCCGGAATTGGTTAGGG
1._RUQ_813
CC________TT____
2._RUQ_813
____GG_CC__TT____
3._GU_114_/P
____GG_CC__TT____
4._GU_114_/P
____GG_CC__TT____
5._GU_114_/P
____GG_CC__TT____
6._GU_114_/P
____GG_CC__TT____
7._GU_114_/P
____GG_CC__TT____
8._GU_114_/P
____GG_CC__TT____
9._GU_114_/P
____GG_CC__TT____
10._GU_114_/P
______CC__TT____
11._RUQ_813
______________
12._RUQ_813
____GG____AA____
 575859           
_Input profile
CCTTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_813
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_813
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GU_114_/P
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_114_/P
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_114_/P
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_114_/P
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_114_/P
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_114_/P
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_114_/P
___X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_114_/P
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._RUQ_813
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RUQ_813
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_114_/P RUQ_813

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._GU_114_/P RUQ_813

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_114_/P RUQ_813

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._GU_114_/P

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X3 Y18
 Dapeng Zhang, 2016

4._GU_114_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 1
 Dapeng Zhang, 2016

5._GU_114_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 2
 Dapeng Zhang, 2016

6._GU_114_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 3
 Dapeng Zhang, 2016

7._GU_114_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 7
 Dapeng Zhang, 2016

8._GU_114_/P

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 5
 Dapeng Zhang, 2016

9._GU_114_/P

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 12
 Dapeng Zhang, 2016

10._GU_114_/P

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 9
 Dapeng Zhang, 2016

11._GU_114_/P RUQ_813

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

12._GU_114_/P RUQ_813

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1253 53TcSNP1275 54TcSNP1293 55TcSNP1401
56TcSNP1404 57TcSNP1458 58TcSNP1524 59TcSNP1527