SNP Profiles of PA 120 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	CT	CG	GG	GG	TT	GG	TT	AA	GG	CC	CT	GG	CC
1._RUQ_852	AT	CT	CG	GG	GG	TT	GG	TT	AA	GG	CC	CT	GG	CC
2._RUQ_852	__	__	CG	__	__	__	__	TT	__	__	__	__	__	__
3._RUQ_852	__	__	CG	__	__	__	__	AA	__	__	__	__	GG	__
4._PA120[PER]	__	__	GG	__	__	__	__	__	__	__	__	__	__	__
5._PA_120_[PER]_Fld#_172_Plt#_5	__	__	CG	__	__	__	__	AA	__	__	__	__	GG	__
6._MITC-000291	__	__	CC	__	__	__	__	AA	__	__	__	__	GG	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	TT	CT	GG	CC	AG	GG	TT	AA	AA	TT	TT	GG	GG
1._RUQ_852	AA	TT	CT	GG	CC	AG	GG	TT	AA	AA	TT	TT	GG	GG
2._RUQ_852	__	__	__	GG	__	__	GG	__	__	AA	__	__	GG	GG
3._RUQ_852	__	__	__	GG	__	AG	CC	CG	__	AA	__	__	GG	CC
4._PA120[PER]	__	__	__	__	__	__	CG	__	__	__	__	__	__	__
5._PA_120_[PER]_Fld#_172_Plt#_5	__	__	__	AG	__	GG	CC	CG	__	AA	__	__	AG	CC
6._MITC-000291	__	__	__	AA	__	GG	GG	CC	__	AC	__	__	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CT	CC	AA	CC	GG	CC	CC	AA	GG	GG	AA	CC	AA	CT
1._RUQ_852	CT	CC	AA	CC	GG	CC	CC	AA	GG	GG	AA	CC	AA	CT
2._RUQ_852	CT	__	__	__	__	__	CC	__	GG	__	AA	__	__	__
3._RUQ_852	__	__	__	__	__	__	CC	__	GG	__	AA	__	__	__
4._PA120[PER]	__	__	__	__	__	__	CC	__	CG	__	__	__	__	__
5._PA_120_[PER]_Fld#_172_Plt#_5	__	__	__	__	__	__	CC	__	CG	__	AC	__	__	__
6._MITC-000291	__	__	__	__	__	__	AA	__	CC	__	CC	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	AA	TT	AA	GG	GG	CC	CC	GT	GG	CC	TT	CC
1._RUQ_852	AA	GG	AA	TT	AA	GG	GG	CC	CC	GT	GG	CC	TT	CC
2._RUQ_852	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
3._RUQ_852	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
4._PA120[PER]	__	__	__	__	AA	__	__	__	AA	__	__	__	__	__
5._PA_120_[PER]_Fld#_172_Plt#_5	__	GG	__	__	AG	__	__	__	CC	__	__	__	__	__
6._MITC-000291	__	GG	__	__	AG	__	__	__	AC	__	__	__	__	__

	57
_Input profile	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_852	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_852	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_852	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._PA120[PER]	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._PA_120_[PER]_Fld#_172_Plt#_5	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._MITC-000291	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PA_120_[PER] RUQ_852B

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._PA_120_[PER] RUQ_852

identical
57 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

View Data

Par
0.995

2._PA_120_[PER] RUQ_852

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._PA_120_[PER] RUQ_852

75 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

4._PA_120_[PER] PA120[PER]

58.3 %
6 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

5._PA_120_[PER] PA_120_[PER]_Fld#_172_Plt#_5

56.3 %
16 shared markers

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USDA-TARS, United States of America

Location: Field: 172, Tree: 5

Notes: TARS_Cacao_collection

Mars, 2018

6._PA_120_[PER] MITC-000291

40.6 %
16 shared markers

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USDA-SHRS, United States of America

Mars, 2018

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP591
36	TcSNP589	37	TcSNP577	38	TcSNP546	39	TcSNP529	40	TcSNP522
41	TcSNP519	42	TcSNP421	43	TcSNP363	44	TcSNP329	45	TcSNP305
46	TcSNP290	47	TcSNP230	48	TcSNP194	49	TcSNP189	50	TcSNP176
51	TcSNP144	52	TcSNP131	53	TcSNP52	54	TcSNP49	55	TcSNP33
56	TcSNP19	57	TcSNP13

SNP Profiles of PA 120 [PER] View Data

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Input profile: PA_120_[PER] RUQ_852B

1._PA_120_[PER] RUQ_852

identical 57 shared markers

2._PA_120_[PER] RUQ_852

identical 14 shared markers

3._PA_120_[PER] RUQ_852

75 % 16 shared markers

4._PA_120_[PER] PA120[PER]

58.3 % 6 shared markers

5._PA_120_[PER] PA_120_[PER]_Fld#_172_Plt#_5

56.3 % 16 shared markers

6._PA_120_[PER] MITC-000291

40.6 % 16 shared markers

identical
57 shared markers

identical
14 shared markers

75 %
16 shared markers

58.3 %
6 shared markers

56.3 %
16 shared markers

40.6 %
16 shared markers