SNP Profiles of CRU 101   View Data

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 Key

 1234567891011121314
_Input profile
ATTTCGGGAGTTGTTTCCGTCTCTAGCT
1._RUQ_1627
ATTTCGGGGGTTTTTTAATTCTTTAGTT
2._CRU_101
____CG________TT________AG__
3._CRU_101
____CG________TT____CT__AG__
4._CRU_101
____CG________TT____CT__AG__
5._CRU_101
____CG________TT____CT__AG__
6._CRU_101
____CG________TT____CT__AG__
7._CRU_101
____CG________TT____CT__AG__
8._RUQ_1627
____CG________TT____________
9._GC-05-164-4-17
____CG________TT____CT__AG__
10._RUQ_1627
____CG________AA________AG__
 1516171819202122232425262728
_Input profile
AACTCTAAGGAACCTTATACCCCCGGGT
1._RUQ_1627
AATTTTAGCCAAGGCTAAAATTCCAGGG
2._CRU_101
______AG____GG____________GG
3._CRU_101
______AG____GG____________GG
4._CRU_101
______AG____GG____________GG
5._CRU_101
______AG____GG____________GG
6._CRU_101
______AG____GG____________GG
7._CRU_101
______AG____GG____________GG
8._RUQ_1627
____TTAG__AAGG____AA____AGGG
9._GC-05-164-4-17
____TTAG__AAGGCG__AA____AGGG
10._RUQ_1627
______AG__AACCCG__AA____AGCC
 2930313233343536373839404142
_Input profile
CTCCGGGGAATTCTACAACGAAACCCCC
1._RUQ_1627
CTCGAGCCAACTTTCCAACCAACCTTCC
2._CRU_101
____AG________CC__CC__CC____
3._CRU_101
____AA________CC__CC__CC____
4._CRU_101
____AA________CC__CC__CC____
5._CRU_101
____AA________CC__CC__CC____
6._CRU_101
____AA________CC__CC__CC____
7._CRU_101
____AA________CC__CC__CC____
8._RUQ_1627
CT__________TTCC__CC__CC____
9._GC-05-164-4-17
CC__AA______TTCC__CC__CC____
10._RUQ_1627
____________AACC__CC__CC____
 4344454647484950515253545556
_Input profile
CTACAAAATTGGGGAGCTAAAAGTGGAC
1._RUQ_1627
CCACGGAACTAAGTGGTTCCAATTGGCC
2._CRU_101
__________AA______CC________
3._CRU_101
__________AA______CC________
4._CRU_101
__________AA______CC________
5._CRU_101
__________AA______CC________
6._CRU_101
__________AA______CC________
7._CRU_101
__________AA______CC________
8._RUQ_1627
____GG____AA______CC________
9._GC-05-164-4-17
____GG____AA______CC________
10._RUQ_1627
____GG____AA______CC________
 575859           
_Input profile
TTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1627
CCAATTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._CRU_101
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._CRU_101
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._CRU_101
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._CRU_101
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._CRU_101
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._CRU_101
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._RUQ_1627
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-05-164-4-17
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._RUQ_1627
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: CL_19_/10 RUQ_905

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._CRU_101 RUQ_1627

59.3 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._CRU_101

50 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D91
 Dapeng Zhang, 2016

3._CRU_101

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 4 > FP
 Dapeng Zhang, 2016

4._CRU_101

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 3 > FP
 Dapeng Zhang, 2016

5._CRU_101

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 2 > FP
 Dapeng Zhang, 2016

6._CRU_101

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 1 > FP
 Dapeng Zhang, 2016

7._CRU_101

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._CRU_101 RUQ_1627

50 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._CRU_101 GC-05-164-4-17

47.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._CRU_101 RUQ_1627

41.2 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13