SNP Profiles of UF 676   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCTCGGGGGTTGGGTCCACGTCTTTAA
1._UF_676___
____CG______________________
2._UF_676___
____CG________GT______CT__AA
3._UF_676___
____CG________GT______CT__AA
4._UF_676___
____CG________GT______CT__AA
5._UF_676___
____CG________GT______CT__AA
6._UF_676___
____CG________GT______CT__AA
7._UF_676___
____CG________GT______CT__AA
8._UF_676___
____CG________GT______CT__AA
9._UF_676___
____GG________GT______CT__AA
10._UF_676___
____CG________GT____________
11._UF_676___
____CG________GT______CT__AA
12._UF_676___
____CG________GT______CT__AA
13._UF_676___
____CG________GT______CT__AA
14._UF_676___
____CG________GT______CT__AA
15._UF_676___
____CG________AA__________AA
16._UF_676___
____CG________AA__________AA
17._UF_676___
____CG________AA__________AA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAATTCTAGCGAGCGTTAAACCTCTAG
1._UF_676___
______________CG____________
2._UF_676___
________AG____CG____________
3._UF_676___
________AG____CG____________
4._UF_676___
________AG____CG____________
5._UF_676___
________AG____CG____________
6._UF_676___
________AG____CG____________
7._UF_676___
________AG____CG____________
8._UF_676___
________AG____CG____________
9._UF_676___
________AG____CG____________
10._UF_676___
______CCAG____CG____AC____AG
11._UF_676___
______CTAG__AGCGGG__AC____AG
12._UF_676___
______CTAG__AGCGGG__AC____AG
13._UF_676___
______CTAG__AGCGGG__AC____AG
14._UF_676___
______CTAG__AGCGGG__AC____AG
15._UF_676___
________AG__AGCGCC__AC____AG
16._UF_676___
________AG__AGCGCC__AC____AG
17._UF_676___
________AG__AGCGCC__AC____AG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GTCTCGAGCGAGTTCCACATCCAGACCT
1._UF_676___
______________CCAC__CC______
2._UF_676___
GT____AG________AC__CC__CC__
3._UF_676___
GT____AG________AC__CC__CC__
4._UF_676___
GT____AG________AC__CC__CC__
5._UF_676___
GT____GG________AC__CC__CC__
6._UF_676___
GT____GG________AC__CC__CC__
7._UF_676___
GT____GG________AC__CC__CC__
8._UF_676___
GT____GG________AC__CC__CC__
9._UF_676___
GT____AG________AC__CC__CC__
10._UF_676___
GTCT__________CCAA__CC__CC__
11._UF_676___
GTCT__GG______CCAC__CC__CC__
12._UF_676___
GTCT__GG______CCAC__CC__CC__
13._UF_676___
GTCT__GG______CCAC__CC__CC__
14._UF_676___
GTCT__GG______CCAC__CC__CC__
15._UF_676___
AC____________GGAC__CC__CC__
16._UF_676___
AC____________GGAC__CC__CC__
17._UF_676___
AC____________GGAC__CC__CC__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ACCCACAGACTTAGGGAGCTACATGTTT
1._UF_676___
____________AG______AC______
2._UF_676___
____________AG______AC______
3._UF_676___
____________AG______AC______
4._UF_676___
____________AG______AC______
5._UF_676___
____________AG______AC______
6._UF_676___
____________AG______AC______
7._UF_676___
____________AG______AC______
8._UF_676___
____________AG______AC______
9._UF_676___
____________AG______AC______
10._UF_676___
______AG____AG______AC______
11._UF_676___
______AG____AG______AC______
12._UF_676___
______AG____AG______AC______
13._UF_676___
______AG____AG______AC______
14._UF_676___
______AG____AG______AC______
15._UF_676___
______AG____AG______AC______
16._UF_676___
______AG____AG______AC______
17._UF_676___
______AG____AG______AC______
 57 58 59 60           
_Input profile
ACCTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._UF_676___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: UF_676 RUQ_56

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._UF_676 RUQ_56

identical
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

2._UF_676

96.2 %
13 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

3._UF_676 RUQ_56

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._UF_676

96.2 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0245
 Dapeng Zhang, 2016

5._UF_676

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8203 3 > FP
 Dapeng Zhang, 2016

6._UF_676

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8203 4 > FP
 Dapeng Zhang, 2016

7._UF_676

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8203 5 > FP
 Dapeng Zhang, 2016

8._UF_676

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8203 7 > FP
 Dapeng Zhang, 2016

9._UF_676

92.3 %
13 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 293 I-043
 Dapeng Zhang, 2016

10._UF_676 RUQ_56

90.6 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._UF_676 GC-08-080-2-03

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

12._UF_676 GC-08-080-2-03

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

13._UF_676 GC-08-080-2-03

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._UF_676 GC-08-080-2-03

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

15._UF_676 RUQ_56

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._UF_676 MITC-000064

73.5 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

17._UF_676 UF_676_Fld#_180_Plt#_2

73.5 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 180, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1237 10TcSNP1230
11TcSNP1205 12TcSNP1144 13TcSNP1112 14TcSNP1062 15TcSNP1053
16TcSNP1019 17TcSNP1010 18TcSNP999 19TcSNP998 20TcSNP945
21TcSNP899 22TcSNP872 23TcSNP836 24TcSNP835 25TcSNP823
26TcSNP800 27TcSNP739 28TcSNP731 29TcSNP723 30TcSNP702
31TcSNP660 32TcSNP645 33TcSNP644 34TcSNP642 35TcSNP640
36TcSNP602 37TcSNP591 38TcSNP589 39TcSNP577 40TcSNP546
41TcSNP529 42TcSNP522 43TcSNP519 44TcSNP421 45TcSNP363
46TcSNP329 47TcSNP305 48TcSNP290 49TcSNP230 50TcSNP194
51TcSNP189 52TcSNP176 53TcSNP144 54TcSNP143 55TcSNP131
56TcSNP52 57TcSNP49 58TcSNP33 59TcSNP19 60TcSNP13