SNP Profiles of UF 667   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCTCGGGGGTTGGGTCCACGTCTTTAA
1._UF_667
____CG________GT______CT__AA
2._RUQ_55
____CG________GT______CT__AA
3._UF_667
____CG________GT______CT__AA
4._UF_667
____CG________GT______CT__AA
5._UF_667
____CG________GT______CT__AA
6._UF_667
____CG________GT______CT__AA
7._UF_667
____CG________GT______CT__AA
8._UF_667
____CG________GT______CT__AA
9._UF_667
____CG________GT______CT__AA
10._UF_667
____CG________GT______CT__AA
11._UF_667
____CG________GT______CT__AA
12._RUQ_55
____CG________GT____________
13._GC-01-029-2-06
____CG________GT______CT__AA
14._GC-01-029-2-06
____CG________GT______CT__AA
15._GC-01-029-2-06
____CG________GT______CT__AA
16._GC-01-029-2-06
____CG________GT______CT__AA
17._GC-01-029-2-06
____CG________GT______CT__AA
18._GC-01-029-2-06
____CG________GT______CT__AA
19._GC-01-029-2-06
____CG________GT______CT__AA
20._GC-01-29-2-6
____CG________AA__________AA
21._RUQ_55
____CG________AA__________AA
22._UF_667
____CG________TT______CC__GG
23._UF_667_Fld#_119_Plt#_1
____CC________AA__________AG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAATTCTAGCGAGCGTTAAACCTCTAG
1._UF_667
________AG____CG____________
2._RUQ_55
________AG____CG____________
3._UF_667
________AG____CG____________
4._UF_667
________AG____CG____________
5._UF_667
________AG____CG____________
6._UF_667
________AG____CG____________
7._UF_667
________AG____CG____________
8._UF_667
________AG____CG____________
9._UF_667
________AG____CG____________
10._UF_667
________AG____CG____________
11._UF_667
________AG____CG____________
12._RUQ_55
______CCAG____CG____AC____AG
13._GC-01-029-2-06
______CTAG__AGCGGG__AC____AG
14._GC-01-029-2-06
______CTAG__AGCGGG__AC____AG
15._GC-01-029-2-06
______CTAG__AGCGGG__AC____AG
16._GC-01-029-2-06
______CTAG__AGCGGG__AC____AG
17._GC-01-029-2-06
______CTAG__AGCGGG__AC____AG
18._GC-01-029-2-06
______CTAG__AGCGGG__AC____AG
19._GC-01-029-2-06
______CTAG____CGGG__AC____AG
20._GC-01-29-2-6
________AG__AGCGCC__AC____AG
21._RUQ_55
________AG__AGCGCC__AC____AG
22._UF_667
________AG____GG____________
23._UF_667_Fld#_119_Plt#_1
________AA__GGGGCG__CC____GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GTCTCGAGCCAGTTCCACATCCAGACCT
1._UF_667
GT____AG________AC__CC__CC__
2._RUQ_55
GT____AG________AC__CC__CC__
3._UF_667
GT____AG________AC__CC__CC__
4._UF_667
GT____AG________AC__CC__CC__
5._UF_667
GT____GG________AC__CC__CC__
6._UF_667
GT____GG________AC__CC__CC__
7._UF_667
GT____GG________AC__CC__CC__
8._UF_667
GT____GG________AC__CC__CC__
9._UF_667
GT____GG________AC__CC__CC__
10._UF_667
GT____GG________AC__CC__CC__
11._UF_667
GT____GG________AC__CC__CC__
12._RUQ_55
GTCT__________CCAA__CC__CC__
13._GC-01-029-2-06
GTCT__GG______CCAC__CC__CC__
14._GC-01-029-2-06
GTCT__GG______CCAC__CC__CC__
15._GC-01-029-2-06
GTCT__GG______CCAC__CC__CC__
16._GC-01-029-2-06
GTCT__GG______CCAC__CC__CC__
17._GC-01-029-2-06
GTCT__GG______CCAC__CC__CC__
18._GC-01-029-2-06
GTCT__GG______CCAC__CC__CC__
19._GC-01-029-2-06
GTCT__GG______CCAC__CC__CC__
20._GC-01-29-2-6
AC____________GGAC__CC__CC__
21._RUQ_55
AC____________GGAC__CC__CC__
22._UF_667
GG____AA________CC__CG__AA__
23._UF_667_Fld#_119_Plt#_1
CC____________GGAC__CG__AC__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ACCCACAGACTTAGGGAGCTACATGTTT
1._UF_667
____________AG______AC______
2._RUQ_55
____________AG______AC______
3._UF_667
____________AG______AC______
4._UF_667
____________AG______AC______
5._UF_667
____________AG______AC______
6._UF_667
____________AG______AC______
7._UF_667
____________AG______AC______
8._UF_667
____________AG______AC______
9._UF_667
____________AG______AC______
10._UF_667
____________AG______AC______
11._UF_667
____________AG______AC______
12._RUQ_55
______AG____AG______AC______
13._GC-01-029-2-06
______AG____AG______AC______
14._GC-01-029-2-06
______AG____AG______AC______
15._GC-01-029-2-06
______AG____AG______AC______
16._GC-01-029-2-06
______AG____AG______AC______
17._GC-01-029-2-06
______AG____AG______AC______
18._GC-01-029-2-06
______AG____AG______AC______
19._GC-01-029-2-06
______AG____AG______AC______
20._GC-01-29-2-6
______AG____AG______AC______
21._RUQ_55
______AG____AG______AC______
22._UF_667
____________AG______AC______
23._UF_667_Fld#_119_Plt#_1
______AA____AA______CC______
 57 58 59 60           
_Input profile
CCCTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._UF_667
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_55
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._UF_667
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._UF_667
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._UF_667
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._UF_667
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._UF_667
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._UF_667
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._UF_667
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._UF_667
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._UF_667
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RUQ_55
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-01-029-2-06
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-01-029-2-06
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-01-029-2-06
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-01-029-2-06
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-01-029-2-06
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-01-029-2-06
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-01-029-2-06
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-01-29-2-6
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._RUQ_55
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._UF_667
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._UF_667_Fld#_119_Plt#_1
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: UF_667 RUQ_55

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._UF_667

96.2 %
13 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._UF_667 RUQ_55

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._UF_667

96.2 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0244
 Dapeng Zhang, 2016

4._UF_667

96.2 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F466 T2
 Dapeng Zhang, 2016

5._UF_667

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 10
 Dapeng Zhang, 2016

6._UF_667

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 5 > FP
 Dapeng Zhang, 2016

7._UF_667

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 11 > F
 Dapeng Zhang, 2016

8._UF_667

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 1 > FP
 Dapeng Zhang, 2016

9._UF_667

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 7
 Dapeng Zhang, 2016

10._UF_667

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 3
 Dapeng Zhang, 2016

11._UF_667

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 2
 Dapeng Zhang, 2016

12._UF_667 RUQ_55

90.6 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

14._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

15._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

17._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

19._UF_667 GC-01-029-2-06

90 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._UF_667 GC-01-29-2-6

73.5 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._UF_667 RUQ_55

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._UF_667

61.5 %
13 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

23._UF_667 UF_667_Fld#_119_Plt#_1

44.1 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 119, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1237 10TcSNP1230
11TcSNP1205 12TcSNP1144 13TcSNP1112 14TcSNP1062 15TcSNP1053
16TcSNP1019 17TcSNP1010 18TcSNP999 19TcSNP998 20TcSNP945
21TcSNP899 22TcSNP872 23TcSNP836 24TcSNP835 25TcSNP823
26TcSNP800 27TcSNP739 28TcSNP731 29TcSNP723 30TcSNP702
31TcSNP660 32TcSNP645 33TcSNP644 34TcSNP642 35TcSNP640
36TcSNP602 37TcSNP591 38TcSNP589 39TcSNP577 40TcSNP546
41TcSNP529 42TcSNP522 43TcSNP519 44TcSNP421 45TcSNP363
46TcSNP329 47TcSNP305 48TcSNP290 49TcSNP230 50TcSNP194
51TcSNP189 52TcSNP176 53TcSNP144 54TcSNP143 55TcSNP131
56TcSNP52 57TcSNP49 58TcSNP33 59TcSNP19 60TcSNP13