SNP Profiles of PA 56 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CT	CG	GG	GG	TT	GG	TT	CC	AA	GT	CC	CT	GG
1._RUQ_32	__	__	CG	__	__	__	__	TT	__	__	__	__	__	__
2._RUQ_32	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
3._PA_56_[PER]	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
4._PA_56_[PER]	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
5._PA_56_[PER]	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
6._PA_56_[PER]	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
7._PA_56_[PER]	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
8._PA_56_[PER]	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
9._NA	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
10._NA	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
11._NA	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
12._NA	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
13._NA	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
14._-	__	__	CG	__	__	__	__	AA	__	__	__	__	__	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	TT	AG	CC	GG	GG	TT	AA	AA	TT	TT	AG	GG
1._RUQ_32	__	__	__	AG	__	__	GG	__	__	AA	__	__	AG	GG
2._RUQ_32	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
3._PA_56_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
4._PA_56_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
5._PA_56_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
6._PA_56_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
7._PA_56_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
8._PA_56_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
9._NA	__	__	__	AG	__	GG	GG	CG	__	AA	__	__	AG	GG
10._NA	__	__	__	AG	__	GG	GG	CG	__	AA	__	__	AG	GG
11._NA	__	__	__	AG	__	GG	GG	CG	__	AA	__	__	AG	GG
12._NA	__	__	__	AG	__	GG	GG	CG	__	AA	__	__	AG	GG
13._NA	__	__	__	AG	__	GG	GG	CG	__	AA	__	__	AG	GG
14._-	__	__	__	AG	__	GG	CC	CG	__	AA	__	__	AG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CT	CG	AA	CC	GG	CT	CC	AT	CG	GG	AA	CC	AA	CC
1._RUQ_32	CT	__	__	__	__	__	CC	__	CG	__	AC	__	__	__
2._RUQ_32	__	__	AA	__	__	__	CC	__	CG	__	AC	__	__	__
3._PA_56_[PER]	__	__	AA	__	__	__	CC	__	CG	__	AC	__	__	__
4._PA_56_[PER]	__	__	GG	__	__	__	CC	__	CG	__	AC	__	__	__
5._PA_56_[PER]	__	__	GG	__	__	__	CC	__	CG	__	AC	__	__	__
6._PA_56_[PER]	__	__	GG	__	__	__	CC	__	CG	__	AC	__	__	__
7._PA_56_[PER]	__	__	GG	__	__	__	CC	__	CG	__	AC	__	__	__
8._PA_56_[PER]	__	__	GG	__	__	__	CC	__	CG	__	AC	__	__	__
9._NA	CC	__	GG	__	__	__	CC	__	CG	__	AC	__	__	__
10._NA	CC	__	GG	__	__	__	CC	__	CG	__	AC	__	__	__
11._NA	CC	__	GG	__	__	__	CC	__	CG	__	AC	__	__	__
12._NA	CC	__	GG	__	__	__	CC	__	CG	__	AC	__	__	__
13._NA	CC	__	GG	__	__	__	CC	__	CG	__	AC	__	__	__
14._-	__	__	__	__	__	__	CC	__	CG	__	AC	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	AA	TT	AG	GG	GG	CC	CC	AT	GG	GG	CC	CT
1._RUQ_32	__	GG	__	__	AG	__	__	__	CC	__	__	__	__	__
2._RUQ_32	__	__	__	__	AG	__	__	__	CC	__	__	__	__	__
3._PA_56_[PER]	__	__	__	__	AG	__	__	__	CC	__	__	__	__	__
4._PA_56_[PER]	__	__	__	__	AG	__	__	__	CC	__	__	__	__	__
5._PA_56_[PER]	__	__	__	__	AG	__	__	__	CC	__	__	__	__	__
6._PA_56_[PER]	__	__	__	__	AG	__	__	__	CC	__	__	__	__	__
7._PA_56_[PER]	__	__	__	__	AG	__	__	__	CC	__	__	__	__	__
8._PA_56_[PER]	__	__	__	__	AG	__	__	__	CC	__	__	__	__	__
9._NA	__	GG	__	__	AG	__	__	__	CC	__	__	__	__	__
10._NA	__	GG	__	__	AG	__	__	__	CC	__	__	__	__	__
11._NA	__	GG	__	__	AG	__	__	__	CC	__	__	__	__	__
12._NA	__	GG	__	__	AG	__	__	__	CC	__	__	__	__	__
13._NA	__	GG	__	__	AG	__	__	__	CC	__	__	__	__	__
14._-	__	GG	__	__	AG	__	__	__	CC	__	__	__	__	__

	57	58
_Input profile	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_32	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_32	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._PA_56_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._PA_56_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._PA_56_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._PA_56_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._PA_56_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._PA_56_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._NA	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._NA	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._NA	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._NA	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._NA	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._-	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PA_56_[PER] RUQ_32

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

1._PA_56_[PER] RUQ_32

96.4 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._PA_56_[PER] RUQ_32

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._PA_56_[PER]

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

4._PA_56_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 6

Dapeng Zhang, 2016

5._PA_56_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 4

Dapeng Zhang, 2016

6._PA_56_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 3

Dapeng Zhang, 2016

7._PA_56_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 2

Dapeng Zhang, 2016

8._PA_56_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 1

Dapeng Zhang, 2016

9._PA_56_[PER] NA

84.2 %
19 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

10._PA_56_[PER] NA

84.2 %
19 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

11._PA_56_[PER] NA

84.2 %
19 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

12._PA_56_[PER] NA

84.2 %
19 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._PA_56_[PER] NA

84.2 %
19 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

14._PA_56_[PER] -

71.9 %
16 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 76, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1237	10	TcSNP1230
11	TcSNP1205	12	TcSNP1144	13	TcSNP1112	14	TcSNP1062	15	TcSNP1053
16	TcSNP1019	17	TcSNP1010	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP591
36	TcSNP589	37	TcSNP577	38	TcSNP546	39	TcSNP529	40	TcSNP522
41	TcSNP519	42	TcSNP421	43	TcSNP363	44	TcSNP329	45	TcSNP305
46	TcSNP290	47	TcSNP230	48	TcSNP194	49	TcSNP189	50	TcSNP176
51	TcSNP144	52	TcSNP143	53	TcSNP131	54	TcSNP52	55	TcSNP49
56	TcSNP33	57	TcSNP19	58	TcSNP13