SNP Profiles of GU 147 /H View Data

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_Input profile	AT	TT	CG	GG	GG	TT	GT	GT	AA	GT	CC	CC	GG	CC
1._RUQ_222	AA	TT	CC	GG	AG	TT	GG	TT	AA	GG	CC	TT	GG	CC
2._RUQ_222	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
3._GC-01-080-4-16	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
4._GC-01-080-4-16	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
5._GC-01-080-4-16	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
6._GC-01-080-4-16	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
7._GC-01-080-4-16	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
8._GC-01-080-4-16	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
9._GC-01-080-4-16	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
10._GC-01-080-4-16	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
11._GC-01-080-4-16	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
12._GU_147_/H	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
13._GU_147_/H	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
14._GU_147_/H	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
15._GU_147_/H	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
16._GU_147_/H	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
17._GU_147_/H	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
18._GU_147_/H	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
19._GU_147_/H	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
20._GU_147_/H	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
21._RUQ_222	__	__	CC	__	__	__	__	TT	__	__	__	__	__	__
22._GC-01-80-4-16	__	__	GG	__	__	__	__	AA	__	__	__	__	GG	__
23._RUQ_222	__	__	CC	__	__	__	__	AA	__	__	__	__	GG	__

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_Input profile	AA	CT	CC	AG	CG	GG	CG	TT	AA	CC	TT	CT	GG	GG
1._RUQ_222	AA	CC	CC	GG	CC	GG	GG	CT	AA	AA	TT	TT	AA	GG
2._RUQ_222	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
3._GC-01-080-4-16	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
4._GC-01-080-4-16	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
5._GC-01-080-4-16	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
6._GC-01-080-4-16	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
7._GC-01-080-4-16	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
8._GC-01-080-4-16	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
9._GC-01-080-4-16	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
10._GC-01-080-4-16	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
11._GC-01-080-4-16	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
12._GU_147_/H	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
13._GU_147_/H	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
14._GU_147_/H	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
15._GU_147_/H	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
16._GU_147_/H	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
17._GU_147_/H	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
18._GU_147_/H	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
19._GU_147_/H	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
20._GU_147_/H	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
21._RUQ_222	__	__	CC	GG	__	__	GG	__	__	AA	__	__	AA	GG
22._GC-01-80-4-16	__	__	__	GG	__	GG	CC	CC	__	AA	__	__	AA	CC
23._RUQ_222	__	__	__	AG	__	GG	CC	CC	__	AA	__	__	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	CG	AA	CC	AG	CT	CC	AA	AT	GG	AA	CC	CC	AC
1._RUQ_222	CC	CC	AA	CC	GG	TT	CC	AA	TT	CC	AG	AA	CC	AA
2._RUQ_222	__	__	AA	__	__	__	__	AA	__	CC	__	AA	__	__
3._GC-01-080-4-16	CT	__	GG	__	__	__	CC	AA	__	CC	__	AA	__	__
4._GC-01-080-4-16	CT	__	GG	__	__	__	CC	AA	__	CC	__	AA	__	__
5._GC-01-080-4-16	CT	__	GG	__	__	__	CC	AA	__	CC	__	AA	__	__
6._GC-01-080-4-16	CT	__	GG	__	__	__	CC	AA	__	CC	__	AA	__	__
7._GC-01-080-4-16	CT	__	GG	__	__	__	CC	AA	__	CC	__	AA	__	__
8._GC-01-080-4-16	CT	__	GG	__	__	__	CC	AA	__	CC	__	AA	__	__
9._GC-01-080-4-16	CT	__	GG	__	__	__	CC	AA	__	CC	__	AA	__	__
10._GC-01-080-4-16	CT	__	GG	__	__	__	CC	AA	__	CC	__	AA	__	__
11._GC-01-080-4-16	CT	__	GG	__	__	__	CC	AA	__	CC	__	AA	__	__
12._GU_147_/H	__	__	GG	__	__	__	__	AA	__	CC	__	AA	__	__
13._GU_147_/H	__	__	GG	__	__	__	__	AA	__	CC	__	AA	__	__
14._GU_147_/H	__	__	GG	__	__	__	__	AA	__	CC	__	AA	__	__
15._GU_147_/H	__	__	GG	__	__	__	__	AA	__	CC	__	AA	__	__
16._GU_147_/H	__	__	GG	__	__	__	__	AA	__	CC	__	AA	__	__
17._GU_147_/H	__	__	GG	__	__	__	__	AA	__	CC	__	AA	__	__
18._GU_147_/H	__	__	GG	__	__	__	__	AA	__	CC	__	AA	__	__
19._GU_147_/H	__	__	GG	__	__	__	__	AA	__	CC	__	AA	__	__
20._GU_147_/H	__	__	GG	__	__	__	__	AA	__	CC	__	AA	__	__
21._RUQ_222	CC	__	__	__	__	__	CC	AA	__	CC	__	AA	__	__
22._GC-01-80-4-16	__	__	__	__	__	__	GG	AA	__	CC	__	AA	__	__
23._RUQ_222	__	__	__	__	__	__	GG	CC	__	CC	__	AA	__	__

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_Input profile	CC	AC	GG	AA	TT	AA	GT	GG	CT	AC	AT	GT	GG	CC
1._RUQ_222	TT	AA	GG	AA	CC	GG	GG	GG	CC	AA	AA	TT	GG	CC
2._RUQ_222	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
3._GC-01-080-4-16	__	__	GG	__	__	GG	__	__	__	__	__	__	__	__
4._GC-01-080-4-16	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
5._GC-01-080-4-16	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
6._GC-01-080-4-16	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
7._GC-01-080-4-16	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
8._GC-01-080-4-16	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
9._GC-01-080-4-16	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
10._GC-01-080-4-16	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
11._GC-01-080-4-16	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
12._GU_147_/H	__	__	__	__	__	GG	__	__	__	__	__	__	__	__
13._GU_147_/H	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
14._GU_147_/H	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
15._GU_147_/H	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
16._GU_147_/H	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
17._GU_147_/H	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
18._GU_147_/H	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
19._GU_147_/H	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
20._GU_147_/H	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
21._RUQ_222	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
22._GC-01-80-4-16	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
23._RUQ_222	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__

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_Input profile	TT	AC	CT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_222	TT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_222	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-080-4-16	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-080-4-16	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-080-4-16	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-080-4-16	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-080-4-16	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-080-4-16	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-080-4-16	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-01-080-4-16	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-01-080-4-16	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GU_147_/H	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GU_147_/H	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GU_147_/H	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GU_147_/H	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GU_147_/H	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GU_147_/H	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GU_147_/H	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GU_147_/H	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GU_147_/H	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._RUQ_222	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._GC-01-80-4-16	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._RUQ_222	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: SPA_16_[COL] RUQ_691

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

IMC
0.547 Nan
0.446

1._GU_147_/H RUQ_222

63.6 %
59 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.997

2._GU_147_/H RUQ_222

57.7 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._GU_147_/H GC-01-080-4-16

52.5 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

4._GU_147_/H GC-01-080-4-16

52.4 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15 > FP4

5._GU_147_/H GC-01-080-4-16

52.4 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

6._GU_147_/H GC-01-080-4-16

52.4 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

7._GU_147_/H GC-01-080-4-16

52.4 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

8._GU_147_/H GC-01-080-4-16

52.4 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

9._GU_147_/H GC-01-080-4-16

52.4 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

10._GU_147_/H GC-01-080-4-16

52.4 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

11._GU_147_/H GC-01-080-4-16

52.4 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

12._GU_147_/H

50 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1416 1 > FP

Dapeng Zhang, 2016

13._GU_147_/H

50 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1416 5 > FP

Dapeng Zhang, 2016

14._GU_147_/H

50 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1416 2

Dapeng Zhang, 2016

15._GU_147_/H

50 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1416 7

Dapeng Zhang, 2016

16._GU_147_/H

50 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1416 12

Dapeng Zhang, 2016

17._GU_147_/H

50 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1416 13

Dapeng Zhang, 2016

18._GU_147_/H

50 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1416 16

Dapeng Zhang, 2016

19._GU_147_/H

50 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1416 14 > F

Dapeng Zhang, 2016

20._GU_147_/H

50 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1416 15 > F

Dapeng Zhang, 2016

21._GU_147_/H RUQ_222

46.9 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

22._GU_147_/H GC-01-80-4-16

35.3 %
17 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 4, Rep: 16, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

23._GU_147_/H RUQ_222

32.4 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13