SNP Profiles of GU 136 /H   View Data

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 Key

 1234567891011121314
_Input profile
AATTGGAGAGTTGTGTAAGTCTTTAGCT
1._RUQ_221
AATTGGGGAATTGGTTAAGGCCTTGGCC
2._RUQ_221
____GG________TT____________
3._GU_136_/H
____GG______________CC__GG__
4._GU_136_/H
____GG________TT____CC__GG__
5._GU_136_/H
____GG________TT____CC__GG__
6._GU_136_/H
____GG________TT____CC__GG__
7._GU_136_/H
____GG________TT____CC__GG__
8._GU_136_/H
____GG________TT____CC__GG__
9._GU_136_/H
____GG________TT____CC__GG__
10._GU_136_/H
____GG________TT____CC__GG__
11._GU_136_/H
____GG________TT____CC__GG__
12._GU_136_/H
____GG________TT____CC__GG__
13._GU_136_/H
____GG________TT____CC__GG__
14._GU_136_/H
____GG________TT____CC__GG__
15._GU_136_/H
____GG________TT____CC__GG__
16._GU_136_/H
____GG________TT____CC__GG__
17._GU_136_/H
____GG________TT____CC__GG__
18._RUQ_221
____GG________TT____CC__GG__
19._GC-03-019-2-08
____GG________TT____CC__GG__
20._GC-03-019-2-08
____GG________TT____CC__GG__
21._GC-03-019-2-08
____GG________TT____CC__GG__
22._GC-03-019-2-08
____GG________TT____CC__GG__
23._GC-03-019-2-08
____GG________TT____CC__GG__
24._GC-03-019-2-08
____GG________TT____CC__GG__
25._GC-03-019-2-08
____GG________TT____CC__GG__
26._GC-03-019-2-08
____GG________TT____CC__GG__
27._GC-03-019-2-08
____GG________TT____CC__GG__
28._GC-03-019-2-08
____GG________TT____CC__GG__
29._GC-03-019-2-08
____GG________TT____CC__GG__
30._GC-03-019-2-08
____GG________TT____CC__GG__
31._GC-03-019-2-08
____GG________TT____CC__GG__
32._GC-03-019-2-08
____GG______________CC__GG__
33._GC-03-019-2-08
____GG________TT____CC__GG__
34._GC-03-19-2-8
____CC________AA________GG__
 1516171819202122232425262728
_Input profile
AACTTTGGCCAGGGCTAAAATTCTAGTT
1._RUQ_221
AATTCCAACCGGGGCCAAAATTTTAAGG
2._RUQ_221
____CCAA____GG____AA____AAGG
3._GU_136_/H
______AA____GG____________GG
4._GU_136_/H
______AA____GG____________GG
5._GU_136_/H
______AA____GG____________GG
6._GU_136_/H
______AA____GG____________GG
7._GU_136_/H
______AA____GG____________GG
8._GU_136_/H
______AA____GG____________GG
9._GU_136_/H
______AA____GG____________GG
10._GU_136_/H
______AA____GG____________GG
11._GU_136_/H
______AA____GG____________GG
12._GU_136_/H
______AA____GG____________GG
13._GU_136_/H
______AA____GG____________GG
14._GU_136_/H
______AA____GG____________GG
15._GU_136_/H
______AA____GG____________GG
16._GU_136_/H
______AA____GG____________GG
17._GU_136_/H
______AA____GG____________GG
18._RUQ_221
______AA____GG____________GG
19._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
20._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
21._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
22._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
23._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
24._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
25._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
26._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
27._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
28._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
29._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
30._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
31._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
32._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
33._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
34._GC-03-19-2-8
______AA__GGCCCC__AA____AACC
 2930313233343536373839404142
_Input profile
CCCGAGCCAACTCTCCAACCAAACTTAC
1._RUQ_221
CCCCAACCGGTTCCCCTTCCGGAACCAA
2._RUQ_221
CC__________CCCC__CC__AA____
3._GU_136_/H
____GG________CC__CC__AA____
4._GU_136_/H
____GG________CC__CC__AA____
5._GU_136_/H
____GG________CC__CC__AA____
6._GU_136_/H
____GG________CC__CC__AA____
7._GU_136_/H
____GG________CC__CC__AA____
8._GU_136_/H
____GG________CC__CC__AA____
9._GU_136_/H
____GG________CC__CC__AA____
10._GU_136_/H
____GG________CC__CC__AA____
11._GU_136_/H
____GG________CC__CC__AA____
12._GU_136_/H
____GG________CC__CC__AA____
13._GU_136_/H
____GG________CC__CC__AA____
14._GU_136_/H
____GG________CC__CC__AA____
15._GU_136_/H
____GG________CC__CC__AA____
16._GU_136_/H
____GG________CC__CC__AA____
17._GU_136_/H
____GG________CC__CC__AA____
18._RUQ_221
____AA________CC__CC__AA____
19._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
20._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
21._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
22._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
23._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
24._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
25._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
26._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
27._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
28._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
29._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
30._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
31._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
32._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
33._GC-03-019-2-08
____GG______CCCC__CC__AA____
34._GC-03-19-2-8
____________GGCC__CC__AA____
 4344454647484950515253545556
_Input profile
CTACAACTAAGTAGCTCCATTTGGCCCT
1._RUQ_221
TTAAAACCGGGGGGCCAAAATTGGCCTT
2._RUQ_221
________GG______AA__________
3._GU_136_/H
________GG______AA__________
4._GU_136_/H
________GG______AA__________
5._GU_136_/H
________GG______AA__________
6._GU_136_/H
________GG______AA__________
7._GU_136_/H
________GG______AA__________
8._GU_136_/H
________GG______AA__________
9._GU_136_/H
________GG______AA__________
10._GU_136_/H
________GG______AA__________
11._GU_136_/H
________GG______AA__________
12._GU_136_/H
________GG______AA__________
13._GU_136_/H
________GG______AA__________
14._GU_136_/H
________GG______AA__________
15._GU_136_/H
________GG______AA__________
16._GU_136_/H
________GG______AA__________
17._GU_136_/H
________GG______AA__________
18._RUQ_221
________GG______AA__________
19._GC-03-019-2-08
________GG______AA__________
20._GC-03-019-2-08
________GG______AA__________
21._GC-03-019-2-08
________GG______AA__________
22._GC-03-019-2-08
________GG______AA__________
23._GC-03-019-2-08
________GG______AA__________
24._GC-03-019-2-08
________GG______AA__________
25._GC-03-019-2-08
________GG______AA__________
26._GC-03-019-2-08
________GG______AA__________
27._GC-03-019-2-08
________GG______AA__________
28._GC-03-019-2-08
________GG______AA__________
29._GC-03-019-2-08
________GG______AA__________
30._GC-03-019-2-08
________GG______AA__________
31._GC-03-019-2-08
________GG______AA__________
32._GC-03-019-2-08
________GG______AA__________
33._GC-03-019-2-08
________GG______AA__________
34._GC-03-19-2-8
________GG______AA__________
 5758            
_Input profile
ACCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_221
AATTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_221
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_136_/H
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._RUQ_221
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GC-03-019-2-08
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._GC-03-19-2-8
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: SLC_19 RUQ_1664

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._GU_136_/H RUQ_221

59.5 %
58 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._GU_136_/H RUQ_221

53.3 %
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._GU_136_/H

50 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

4._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

6._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

7._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

8._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

9._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

10._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

11._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

12._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

13._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

14._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

15._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

16._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

17._GU_136_/H

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

18._GU_136_/H RUQ_221

50 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

20._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

21._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

22._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

24._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

25._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

26._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

27._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

28._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

29._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

31._GU_136_/H GC-03-019-2-08

47.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

32._GU_136_/H GC-03-019-2-08

47.4 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

33._GU_136_/H GC-03-019-2-08

47.4 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

34._GU_136_/H GC-03-19-2-8

34.4 %
16 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP305
46TcSNP290 47TcSNP230 48TcSNP194 49TcSNP189 50TcSNP176
51TcSNP144 52TcSNP143 53TcSNP131 54TcSNP52 55TcSNP49
56TcSNP33 57TcSNP19 58TcSNP13