SNP Profiles of GU 221 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTTTCGGGGGTTGTGTAAGGCTCTGGCC
1._GU_221_/C___
AATTGGGGAATTGGTTAAGTCCTTGGCT
2._GU_221_/C___
AATTGGGGAATTGGTTAAGTCCTTGGCT
3._GU_221_/C___
____GG________TT____CC__GG__
4._GU_221_/C___
____GG________TT____CC__GG__
5._GU_221_/C___
____GG________TT____CC__GG__
6._GU_221_/C___
____GG________TT____CC__GG__
7._GU_221_/C___
____GG________TT____CC__GG__
8._GU_221_/C___
____GG________TT____CC__GG__
9._GU_221_/C___
____GG________TT____CC__GG__
10._GU_221_/C___
____GG________TT____CC__GG__
11._GU_221_/C___
____GG________TT____CC__GG__
12._GU_221_/C___
____GG________TT____CC__GG__
13._GU_221_/C___
____GG________TT____CC__GG__
14._GU_221_/C___
____GG________TT____CC__GG__
15._GU_221_/C___
____CC________TT____CC__GG__
16._GU_221_/C___
____GG________TT____CC__GG__
17._GU_221_/C___
____GG________TT____CC__GG__
18._GU_221_/C___
____GG________TT____CC__GG__
19._GU_221_/C___
____GG________TT____CC__GG__
20._GU_221_/C___
____GG________TT____CC__GG__
21._GU_221_/C___
____GG________TT____CC__GG__
22._GU_221_/C___
____GG________TT____CC__GG__
23._GU_221_/C___
____GG________TT____CC__GG__
24._GU_221_/C___
____GG________TT____CC__GG__
25._GU_221_/C___
____GG________TT____CC__GG__
26._GU_221_/C___
____GG________TT____CC__GG__
27._GU_221_/C___
____GG________TT____CC__GG__
28._GU_221_/C___
____CC________TT____CC__GG__
29._GU_221_/C___
____CC________TT____CC__GG__
30._GU_221_/C___
____CC________TT____CC__GG__
31._GU_221_/C___
____GG________TT____CC__GG__
32._GU_221_/C___
____GG________TT____________
33._GU_221_/C___
____CC________AA________GG__
34._GU_221_/C___
____CC________AA________GG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACTCTAGCCGGGGCTAAACTTCCGGGG
1._GU_221_/C___
AACCCCAACCGGGGCCAAAATTTTAAGG
2._GU_221_/C___
AACCCCAACCGGGGCCAAAATTTTAAGG
3._GU_221_/C___
____CCAA__GGGGGG__AA______GG
4._GU_221_/C___
____CCAA__GGGGGG__AA____AAGG
5._GU_221_/C___
____CCAA__GGGGGG__AA____AAGG
6._GU_221_/C___
____CCAA__GGGGGG__AA____AAGG
7._GU_221_/C___
____CCAA__GGGGGG__AA____AAGG
8._GU_221_/C___
____CCAA__GGGGGG__AA____AAGG
9._GU_221_/C___
____CCAA__GGGGGG__AA____AAGG
10._GU_221_/C___
____CCAA__GGGGGG__AA____AAGG
11._GU_221_/C___
____CCAA__GGGGGG__AA____AAGG
12._GU_221_/C___
____CCAA__GGGGGG__AA____AAGG
13._GU_221_/C___
____CCAA__GGGGGG__AA____AAGG
14._GU_221_/C___
____CCAA__GGGGGG__AA____AAGG
15._GU_221_/C___
______GG____GG____________GG
16._GU_221_/C___
______AA____GG____________GG
17._GU_221_/C___
______AA____GG____________GG
18._GU_221_/C___
______AA____GG____________GG
19._GU_221_/C___
______AA____GG____________GG
20._GU_221_/C___
______AA____GG____________GG
21._GU_221_/C___
______AA____GG____________GG
22._GU_221_/C___
______AA____GG____________GG
23._GU_221_/C___
______AA____GG____________GG
24._GU_221_/C___
______AA____GG____________GG
25._GU_221_/C___
______AA____GG____________GG
26._GU_221_/C___
______AA____GG____________GG
27._GU_221_/C___
______AA____GG____________GG
28._GU_221_/C___
______GG____GG____________GG
29._GU_221_/C___
____CCGG__GGGGGG__AA____AAGG
30._GU_221_/C___
____CCGG__GGGGGG__AA____AAGG
31._GU_221_/C___
______AA____GG____________GG
32._GU_221_/C___
____CCAA____GG____AA____AAGG
33._GU_221_/C___
______AA__GGCCCC__AA____AACC
34._GU_221_/C___
______AA__GGCCCC__AA____AACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CTCCGGCCAACTCCCCAACGAAACCTAC
1._GU_221_/C___
CCCCAACCAGCTCCACATCCAGAACTAC
2._GU_221_/C___
CC__AACCAGCTCCACATCCAGAACTAC
3._GU_221_/C___
CT__AG______CCAC__CC__AA____
4._GU_221_/C___
CT__AG______CCAC__CC__AA____
5._GU_221_/C___
CT__AG______CCAC__CC__AA____
6._GU_221_/C___
CT__AG______CCAC__CC__AA____
7._GU_221_/C___
CT__AG______CCAC__CC__AA____
8._GU_221_/C___
CT__AG______CCAC__CC__AA____
9._GU_221_/C___
CT__AG______CCAC__CC__AA____
10._GU_221_/C___
CT__AG______CCAC__CC__AA____
11._GU_221_/C___
CT__AG______CCAC__CC__AA____
12._GU_221_/C___
CT__AG______CCAC__CC__AA____
13._GU_221_/C___
CT__AG______CCAC__CC__AA____
14._GU_221_/C___
CT__AG______CCAC__CC__AA____
15._GU_221_/C___
____AA________CC__CC__AA____
16._GU_221_/C___
____AG________AC__CC__AA____
17._GU_221_/C___
____AG________AC__CC__AA____
18._GU_221_/C___
____AG________AC__CC__AA____
19._GU_221_/C___
____AG________AC__CC__AA____
20._GU_221_/C___
____AG________AC__CC__AA____
21._GU_221_/C___
____AG________AC__CC__AA____
22._GU_221_/C___
____AG________AC__CC__AA____
23._GU_221_/C___
____AG________AC__CC__AA____
24._GU_221_/C___
____AG________AC__CC__AA____
25._GU_221_/C___
____AG________AC__CC__AA____
26._GU_221_/C___
____AG________AC__CC__AA____
27._GU_221_/C___
____AG________AC__CC__AA____
28._GU_221_/C___
____AA________CC__CC__AA____
29._GU_221_/C___
CC__AA______CCCC__CC__AA____
30._GU_221_/C___
CC__AA______CCCC__CC__AA____
31._GU_221_/C___
____AA________AC__CC__AA____
32._GU_221_/C___
CC__________CCAC__CC__AA____
33._GU_221_/C___
____________GGAC__CC__AA____
34._GU_221_/C___
____________GGAC__CC__AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCACAGAACCAAGTAGTTCCAATTGGCC
1._GU_221_/C___
CTAAGGAACCGGGGGGCCAAAATTGGCC
2._GU_221_/C___
CTAAGGAACCGGGGGGCCAAAATTGGCC
3._GU_221_/C___
____GG____GG______AA________
4._GU_221_/C___
____GG____GG______AA________
5._GU_221_/C___
____GG____GG______AA________
6._GU_221_/C___
____GG____GG______AA________
7._GU_221_/C___
____GG____GG______AA________
8._GU_221_/C___
____GG____GG______AA________
9._GU_221_/C___
____GG____GG______AA________
10._GU_221_/C___
____GG____GG______AA________
11._GU_221_/C___
____GG____GG______AA________
12._GU_221_/C___
____GG____GG______AA________
13._GU_221_/C___
____GG____GG______AA________
14._GU_221_/C___
____GG____GG______AA________
15._GU_221_/C___
__________GG______AA________
16._GU_221_/C___
__________GG______AA________
17._GU_221_/C___
__________GG______AA________
18._GU_221_/C___
__________GG______AA________
19._GU_221_/C___
__________GG______AA________
20._GU_221_/C___
__________GG______AA________
21._GU_221_/C___
__________GG______AA________
22._GU_221_/C___
__________GG______AA________
23._GU_221_/C___
__________GG______AA________
24._GU_221_/C___
__________GG______AA________
25._GU_221_/C___
__________GG______AA________
26._GU_221_/C___
__________GG______AA________
27._GU_221_/C___
__________GG______AA________
28._GU_221_/C___
__________GG______AA________
29._GU_221_/C___
____GG____GG______AA________
30._GU_221_/C___
____GG____GG______AA________
31._GU_221_/C___
__________GG______AA________
32._GU_221_/C___
____GG____GG______AA________
33._GU_221_/C___
____GG____GG______AA________
34._GU_221_/C___
____GG____GG______AA________
 57 58 59            
_Input profile
CTAACTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GU_221_/C___
TTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GU_221_/C___
TTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: SJ_1_/40_[POU] RUQ_1438

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._GU_221_/C RUQ_200

63.6 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._GU_221_/C RUQ_200B

62.9 %
58 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._GU_221_/C GC-01-075-4-11

57.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

4._GU_221_/C GC-01-075-4-11

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

5._GU_221_/C GC-01-075-4-11

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

6._GU_221_/C GC-01-075-4-11

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

7._GU_221_/C GC-01-075-4-11

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

8._GU_221_/C GC-01-075-4-11

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

9._GU_221_/C GC-01-075-4-11

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

10._GU_221_/C GC-01-075-4-11

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._GU_221_/C GC-01-075-4-11

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

12._GU_221_/C GC-01-075-4-11

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

13._GU_221_/C GC-01-075-4-11

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._GU_221_/C GC-01-075-4-11

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

16._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016

17._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

18._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

19._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

20._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

21._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

22._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

23._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

24._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

25._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

26._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

27._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

28._GU_221_/C

53.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

29._GU_221_/C GC-01-075-4-11

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._GU_221_/C GC-01-075-4-11

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

31._GU_221_/C RUQ_200

50 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._GU_221_/C RUQ_200

50 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._GU_221_/C GC-01-75-4-11

35.3 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

34._GU_221_/C RUQ_200

35.3 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13