SNP Profiles of GU 171 /C   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AATTCCGGAGATGGTTAAGGCCTTAGCC
1._RUQ_195
AATTGGGGAA__GGTTAATTCCTTGG__
2._RUQ_195
____GG________TT____________
3._RUQ_195
____GG________TT____CC__GG__
4._GC-01-094-5-11
____GG________TT____CC__GG__
5._GC-01-094-5-11
____GG________TT____CC__GG__
6._GC-01-094-5-11
____GG________TT____CC__GG__
7._GC-01-094-5-11
____GG________TT____CC__GG__
8._GC-01-094-5-11
____GG________TT____CC__GG__
9._GC-01-094-5-11
____GG________TT____CC__GG__
10._GC-01-094-5-11
____GG________TT____CC__GG__
11._GU_171_/C
____GG________TT____CC__GG__
12._GU_171_/C
____GG________TT____CC__GG__
13._GU_171_/C
____GG________TT____CC__GG__
14._GU_171_/C
____GG________TT____CC__GG__
15._GU_171_/C
____GG________TT____CC__GG__
16._GU_171_/C
____GG________TT____CC__GG__
17._GU_171_/C
____GG________TT____CC__GG__
18._GC-01-94-5-11
____CC________AA________GG__
19._GC-01-94-5-11
____CC________AA________GG__
20._RUQ_195
____CC________AA________GG__
 1516171819202122232425262728
_Input profile
AACCCCAGCCGGCCTTTTACTTCTGGGG
1._RUQ_195
AACCCCAACCGGGGCCAAAATTCTAAGG
2._RUQ_195
____CCAA__GGGG____AA____AAGG
3._RUQ_195
______AA____GG____________GG
4._GC-01-094-5-11
____CCAA__GGGGGG__AA____AAGG
5._GC-01-094-5-11
____CCAA__GGGGGG__AA____AAGG
6._GC-01-094-5-11
____CCAA__GGGGGG__AA____AAGG
7._GC-01-094-5-11
____CCAA__GGGGGG__AA____AAGG
8._GC-01-094-5-11
____CCAA__GGGGGG__AA____AAGG
9._GC-01-094-5-11
____CCAA__GGGGGG__AA____AAGG
10._GC-01-094-5-11
____CCAA__GGGGGG__AA____AAGG
11._GU_171_/C
______AA____GG____________GG
12._GU_171_/C
______AA____GG____________GG
13._GU_171_/C
______AA____GG____________GG
14._GU_171_/C
______AA____GG____________GG
15._GU_171_/C
______AA____GG____________GG
16._GU_171_/C
______AA____GG____________GG
17._GU_171_/C
______AA____GG____________GG
18._GC-01-94-5-11
______AA__GGCCCC__AA____AACC
19._GC-01-94-5-11
______AA__GGCCCC__AA____AACC
20._RUQ_195
______AA__GGCCCC__AA____AACC
 2930313233343536373839404142
_Input profile
TTCCAACCAGTTCCAAATGGAACCCCAC
1._RUQ_195
CCCCAACCGGCCCCCCAACCAA__CTCC
2._RUQ_195
CC__________CCCC__CC__AA____
3._RUQ_195
____AA________CC__CC__AA____
4._GC-01-094-5-11
CC__GG______CCCC__CC__AA____
5._GC-01-094-5-11
CC__GG______CCCC__CC__AA____
6._GC-01-094-5-11
CC__GG______CCCC__CC__AA____
7._GC-01-094-5-11
CC__GG______CCCC__CC__AA____
8._GC-01-094-5-11
CC__GG______CCCC__CC__AA____
9._GC-01-094-5-11
CC__GG______CCCC__CC__AA____
10._GC-01-094-5-11
CC__GG______CCCC__CC__AA____
11._GU_171_/C
____GG________CC__CC__AA____
12._GU_171_/C
____GG________CC__CC__AA____
13._GU_171_/C
____GG________CC__CC__AA____
14._GU_171_/C
____GG________CC__CC__AA____
15._GU_171_/C
____GG________CC__CC__AA____
16._GU_171_/C
____GG________CC__CC__AA____
17._GU_171_/C
____GG________CC__CC__AA____
18._GC-01-94-5-11
____________GGCC__CC__AA____
19._GC-01-94-5-11
____________GGCC__CC__AA____
20._RUQ_195
____________GGCC__CC__AA____
 4344454647484950515253545556
_Input profile
CCAAGGAACTAGGGAGTTACATGGGGCC
1._RUQ_195
CTAAGGAACCGGGGGGCCAAAATTGGCC
2._RUQ_195
____GG____GG______AA________
3._RUQ_195
__________GG______AA________
4._GC-01-094-5-11
____GG____GG______AA________
5._GC-01-094-5-11
____GG____GG______AA________
6._GC-01-094-5-11
____GG____GG______AA________
7._GC-01-094-5-11
____GG____GG______AA________
8._GC-01-094-5-11
____GG____GG______AA________
9._GC-01-094-5-11
____GG____GG______AA________
10._GC-01-094-5-11
____GG____GG______AA________
11._GU_171_/C
__________GG______AA________
12._GU_171_/C
__________GG______AA________
13._GU_171_/C
__________GG______AA________
14._GU_171_/C
__________GG______AA________
15._GU_171_/C
__________GG______AA________
16._GU_171_/C
__________GG______AA________
17._GU_171_/C
__________GG______AA________
18._GC-01-94-5-11
____GG____GG______AA________
19._GC-01-94-5-11
____GG____GG______AA________
20._RUQ_195
____GG____GG______AA________
 575859           
_Input profile
TTCCCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_195
TTAATTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_195
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_195
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-01-094-5-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-094-5-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-094-5-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-094-5-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-01-094-5-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-01-094-5-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-01-094-5-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_171_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_171_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_171_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_171_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_171_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_171_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_171_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-01-94-5-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-01-94-5-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._RUQ_195
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: SCA_9 RUQ_1064

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._GU_171_/C RUQ_195

63.4 %
56 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._GU_171_/C RUQ_195

47.1 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._GU_171_/C RUQ_195

46.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._GU_171_/C GC-01-094-5-11

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

5._GU_171_/C GC-01-094-5-11

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

6._GU_171_/C GC-01-094-5-11

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

7._GU_171_/C GC-01-094-5-11

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._GU_171_/C GC-01-094-5-11

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._GU_171_/C GC-01-094-5-11

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

10._GU_171_/C GC-01-094-5-11

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._GU_171_/C

38.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 2 > FP
 Dapeng Zhang, 2016

12._GU_171_/C

38.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._GU_171_/C

38.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 9
 Dapeng Zhang, 2016

14._GU_171_/C

38.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 12
 Dapeng Zhang, 2016

15._GU_171_/C

38.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 14
 Dapeng Zhang, 2016

16._GU_171_/C

38.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 1 > FP
 Dapeng Zhang, 2016

17._GU_171_/C

38.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 10 > F
 Dapeng Zhang, 2016

18._GU_171_/C GC-01-94-5-11

38.2 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._GU_171_/C GC-01-94-5-11

38.2 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

20._GU_171_/C RUQ_195

38.2 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13