SNP Profiles of GU 133 /C   View Data

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 Key

 1234567891011121314
_Input profile
AACTCCAAAAGGGGAAGGCCCTGGCCAA
1._RUQ_190
AATTCGGGAAGGTTAAGGCCTTGGCCAA
2._GU_133_/C
____CG____________CC__GG____
3._GC-01-116-6-13
____CG____________CC__GG____
4._RUQ_190
____CG______________________
5._GC-01-116-6-13
____CG______TT____CC__GG____
6._GC-08-164-4-07
____CG____________CC__GG____
7._GU_133_/C
____CG______TT____CC__GG____
8._GU_133_/C
____CG____________CC__GG____
9._GC-08-164-4-07
____CG______TT____CC__GG____
10._GC-08-164-4-07
____CG______TT____CC__GG____
11._GC-01-116-6-13
____CG______TT____CC__GG____
12._GC-01-116-6-13
____CG______TT____CC__GG____
13._GC-01-116-6-13
____CG______TT____CC__GG____
14._GC-08-164-4-07
____CG______TT____CC__GG____
15._GC-08-164-4-07
____CG______TT____CC__GG____
16._GC-08-164-4-07
____CG______TT____CC__GG____
17._GU_133_/C
____CG______TT____CC__GG____
18._GU_133_/C
____CG______TT____CC__GG____
19._GU_133_/C
____CG______TT____CC__GG____
20._GU_133_/C
____CG______TT____CC__GG____
21._GU_133_/C
____CG______TT____CC__GG____
22._GU_133_/C
____CG______TT____CC__GG____
23._GU_133_/C
____CG______TT____CC__GG____
24._GU_133_/C
____CG______TT____CC__GG____
25._RUQ_190
____CG______TT____CC__GG____
26._GC-01-116-6-13
____CG______AA________GG____
27._MITC-000670
____CG______AA________GG____
28._RUQ_190
____CG______TT______________
 1516171819202122232425262728
_Input profile
TTCCAAGGGGCCCCTTCCTTCCAAGGCT
1._RUQ_190
CCCCGGCCGGGGCCAAAATTTTAAGGCC
2._GU_133_/C
____GG____GG____________GG__
3._GC-01-116-6-13
__CCGG__GGGGGG__AA____AAGGCC
4._RUQ_190
__________CC________________
5._GC-01-116-6-13
__CCGG__GGGGGG__AA____AAGGCC
6._GC-08-164-4-07
__CCGG__GGGGGG__AA____AAGGCC
7._GU_133_/C
____GG____GG____________GG__
8._GU_133_/C
____GG____GG____________GG__
9._GC-08-164-4-07
__CCGG__GGGGGG__AA____AAGG__
10._GC-08-164-4-07
__CCGG__GGGGGG__AA____AAGGCC
11._GC-01-116-6-13
__CCGG__GGGGGG__AA____AAGGCC
12._GC-01-116-6-13
__CCGG__GGGGGG__AA____AAGGCC
13._GC-01-116-6-13
__CCGG__GGGGGG__AA____AAGGCC
14._GC-08-164-4-07
__CCGG__GGGGGG__AA____AAGGCC
15._GC-08-164-4-07
__CCGG__GGGGGG__AA____AAGGCC
16._GC-08-164-4-07
__CCGG__GGGGGG__AA____AAGGCC
17._GU_133_/C
____GG____GG____________GG__
18._GU_133_/C
____GG____GG____________GG__
19._GU_133_/C
____GG____GG____________GG__
20._GU_133_/C
____GG____GG____________GG__
21._GU_133_/C
____GG____GG____________GG__
22._GU_133_/C
____GG____GG____________GG__
23._GU_133_/C
____GG____GG____________GG__
24._GU_133_/C
____GG____GG____________GG__
25._RUQ_190
____GG____GG____________GG__
26._GC-01-116-6-13
____GG__GGCCCC__AA____AACC__
27._MITC-000670
____GG__GGCCCC__AA____AACC__
28._RUQ_190
__CCGG____GG____AA____AAGGCC
 2930313233343536373839404142
_Input profile
CCAGCCGGTTCCCCAACGAGAACCAACT
1._RUQ_190
CCAACCAGCTCCACATCCAGAACCACCC
2._GU_133_/C
__GG________AC__CC__AA______
3._GC-01-116-6-13
__GG______CCAC__CC__AA______
4._RUQ_190
__________CCAC__CC__________
5._GC-01-116-6-13
__GG______CCAC__CC__AA______
6._GC-08-164-4-07
__GG______CCAC__CC__AA______
7._GU_133_/C
__GG________AC__CC__AA______
8._GU_133_/C
__GG________AC__CC__AA______
9._GC-08-164-4-07
__GG______CCAC__CC__AA______
10._GC-08-164-4-07
__GG______CCAC__CC__AA______
11._GC-01-116-6-13
__GG______CCAC__CC__AA______
12._GC-01-116-6-13
__GG______CCAC__CC__AA______
13._GC-01-116-6-13
__GG______CCAC__CC__AA______
14._GC-08-164-4-07
__GG______CCAC__CC__AA______
15._GC-08-164-4-07
__GG______CCAC__CC__AA______
16._GC-08-164-4-07
__GG______CCAC__CC__AA______
17._GU_133_/C
__GG________AC__CC__AA______
18._GU_133_/C
__GG________AC__CC__AA______
19._GU_133_/C
__GG________AC__CC__AA______
20._GU_133_/C
__GG________AC__CC__AA______
21._GU_133_/C
__GG________AC__CC__AA______
22._GU_133_/C
__GG________AC__CC__AA______
23._GU_133_/C
__GG________AC__CC__AA______
24._GU_133_/C
__GG________AC__CC__AA______
25._RUQ_190
__AA________AC__CC__AA______
26._GC-01-116-6-13
__________GGAC__CC__AA______
27._MITC-000670
__________GGAC__CC__AA______
28._RUQ_190
__________CCAC__CC__AA______
 4344454647484950515253545556
_Input profile
AAAAAATTAAGGAATTACAATTTTCCTT
1._RUQ_190
AAGGAACCGGGGGGCCAAAATTGGCCTT
2._GU_133_/C
________________AA__________
3._GC-01-116-6-13
__GG____________AA__________
4._RUQ_190
________GG______AA__________
5._GC-01-116-6-13
__GG____________AA__________
6._GC-08-164-4-07
__GG____GG______AA__________
7._GU_133_/C
________________AA__________
8._GU_133_/C
________GG______AA__________
9._GC-08-164-4-07
__GG____GG______AA__________
10._GC-08-164-4-07
__GG____GG______AA__________
11._GC-01-116-6-13
__GG____GG______AA__________
12._GC-01-116-6-13
__GG____GG______AA__________
13._GC-01-116-6-13
__GG____GG______AA__________
14._GC-08-164-4-07
__GG____GG______AA__________
15._GC-08-164-4-07
__GG____GG______AA__________
16._GC-08-164-4-07
__GG____GG______AA__________
17._GU_133_/C
________GG______AA__________
18._GU_133_/C
________GG______AA__________
19._GU_133_/C
________GG______AA__________
20._GU_133_/C
________GG______AA__________
21._GU_133_/C
________GG______AA__________
22._GU_133_/C
________GG______AA__________
23._GU_133_/C
________GG______AA__________
24._GU_133_/C
________GG______AA__________
25._RUQ_190
________GG______AA__________
26._GC-01-116-6-13
__GG____GG______AA__________
27._MITC-000670
__GG____GG______AA__________
28._RUQ_190
__GG____GG______AA__________
 5758            
_Input profile
AACCX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_190
CCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-01-116-6-13
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RUQ_190
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-116-6-13
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-08-164-4-07
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-08-164-4-07
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-08-164-4-07
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-01-116-6-13
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-01-116-6-13
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-01-116-6-13
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-08-164-4-07
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-08-164-4-07
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-08-164-4-07
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GU_133_/C
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._RUQ_190
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-116-6-13
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._MITC-000670
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._RUQ_190
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: SCA_6 RUQ_234

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._GU_133_/C RUQ_190

59.5 %
58 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._GU_133_/C

59.1 %
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

3._GU_133_/C GC-01-116-6-13

57.9 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

4._GU_133_/C RUQ_190

57.1 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

5._GU_133_/C GC-01-116-6-13

55 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._GU_133_/C GC-08-164-4-07

55 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._GU_133_/C

54.2 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

8._GU_133_/C

54.2 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

9._GU_133_/C GC-08-164-4-07

52.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._GU_133_/C GC-08-164-4-07

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._GU_133_/C GC-01-116-6-13

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

12._GU_133_/C GC-01-116-6-13

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

13._GU_133_/C GC-01-116-6-13

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._GU_133_/C GC-08-164-4-07

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._GU_133_/C GC-08-164-4-07

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._GU_133_/C GC-08-164-4-07

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

17._GU_133_/C

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._GU_133_/C

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

19._GU_133_/C

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

20._GU_133_/C

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

21._GU_133_/C

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

22._GU_133_/C

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

23._GU_133_/C

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

24._GU_133_/C

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

25._GU_133_/C RUQ_190

50 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._GU_133_/C GC-01-116-6-13

47.1 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

47.1 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

28._GU_133_/C RUQ_190

46.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1275 7TcSNP1253 8TcSNP1230 9TcSNP1205 10TcSNP1144
11TcSNP1112 12TcSNP1062 13TcSNP1053 14TcSNP1019 15TcSNP1010
16TcSNP999 17TcSNP998 18TcSNP945 19TcSNP899 20TcSNP872
21TcSNP836 22TcSNP835 23TcSNP823 24TcSNP800 25TcSNP739
26TcSNP731 27TcSNP723 28TcSNP702 29TcSNP660 30TcSNP645
31TcSNP644 32TcSNP642 33TcSNP640 34TcSNP602 35TcSNP591
36TcSNP589 37TcSNP577 38TcSNP546 39TcSNP529 40TcSNP522
41TcSNP519 42TcSNP421 43TcSNP363 44TcSNP329 45TcSNP305
46TcSNP290 47TcSNP230 48TcSNP194 49TcSNP189 50TcSNP176
51TcSNP144 52TcSNP143 53TcSNP131 54TcSNP52 55TcSNP49
56TcSNP33 57TcSNP19 58TcSNP13