SNP Profiles of GU 125 /C View Data

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_Input profile	AA	CC	CC	AA	AA	AT	GG	GG	AA	GG	CC	TT	GG	CC
1._GU_125_/C	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
2._GU_125_/C	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
3._GU_125_/C	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
4._GU_125_/C	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
5._GU_125_/C	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
6._GU_125_/C	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
7._RUQ_188	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
8._RUQ_188	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
9._GU_125_/C	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
10._RUQ_188	AA	TT	CG	GG	AA	TT	GG	TT	AA	GG	CC	CT	GG	CC
11._GC-01-138-7-17	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
12._GC-01-138-7-17	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
13._GC-01-138-7-17	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
14._GC-01-138-7-17	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
15._GC-01-138-7-17	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
16._GC-01-138-7-17	__	__	CC	__	__	__	__	TT	__	__	CC	__	GG	__
17._RUQ_188	__	__	CG	__	__	__	__	TT	__	__	__	__	__	__
18._RUQ_188	__	__	CG	__	__	__	__	AA	__	__	__	__	GG	__
19._GC-01-138-7-17	__	__	GG	__	__	__	__	AA	__	__	__	__	GG	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	TT	CC	AA	GG	AG	CC	CC	TT	CC	TT	CC	AA	GG
1._GU_125_/C	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
2._GU_125_/C	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
3._GU_125_/C	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
4._GU_125_/C	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
5._GU_125_/C	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
6._GU_125_/C	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
7._RUQ_188	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
8._RUQ_188	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
9._GU_125_/C	__	__	__	GG	__	__	GG	__	__	__	__	__	__	GG
10._RUQ_188	AA	CC	CC	AG	CC	GG	GG	CT	AA	AA	TT	TT	AA	GG
11._GC-01-138-7-17	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
12._GC-01-138-7-17	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
13._GC-01-138-7-17	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
14._GC-01-138-7-17	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
15._GC-01-138-7-17	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
16._GC-01-138-7-17	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA	GG
17._RUQ_188	__	__	CC	AG	__	__	GG	__	__	AA	__	__	AA	GG
18._RUQ_188	__	__	__	AG	__	GG	CC	CC	__	AA	__	__	AA	CC
19._GC-01-138-7-17	__	__	__	GG	__	GG	CC	CC	__	AA	__	__	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CT	CC	AG	CC	GG	TT	CC	CC	AA	CG	GG	AA	CC	AA
1._GU_125_/C	__	__	AA	__	__	__	__	CC	__	CC	__	AA	__	__
2._GU_125_/C	__	__	AA	__	__	__	__	CC	__	CC	__	AA	__	__
3._GU_125_/C	__	__	AA	__	__	__	__	CC	__	CC	__	AA	__	__
4._GU_125_/C	__	__	AA	__	__	__	__	CC	__	CC	__	AA	__	__
5._GU_125_/C	__	__	AA	__	__	__	__	CC	__	CC	__	AA	__	__
6._GU_125_/C	__	__	AA	__	__	__	__	CC	__	CC	__	AA	__	__
7._RUQ_188	__	__	AG	__	__	__	__	AC	__	CC	__	AA	__	__
8._RUQ_188	__	__	AG	__	__	__	__	AC	__	CC	__	AA	__	__
9._GU_125_/C	__	__	AA	__	__	__	__	CC	__	CC	__	AA	__	__
10._RUQ_188	CC	CC	AG	CC	GG	CT	CC	AC	AT	CC	AG	AA	CC	AA
11._GC-01-138-7-17	CC	__	AA	__	__	__	CC	CC	__	CC	__	AA	__	__
12._GC-01-138-7-17	CC	__	AA	__	__	__	CC	CC	__	CC	__	AA	__	__
13._GC-01-138-7-17	CC	__	AA	__	__	__	CC	CC	__	CC	__	AA	__	__
14._GC-01-138-7-17	CC	__	AA	__	__	__	CC	CC	__	CC	__	AA	__	__
15._GC-01-138-7-17	CC	__	AA	__	__	__	CC	CC	__	CC	__	AA	__	__
16._GC-01-138-7-17	CC	__	AA	__	__	__	CC	CC	__	CC	__	AA	__	__
17._RUQ_188	CC	__	__	__	__	__	CC	AC	__	CC	__	AA	__	__
18._RUQ_188	__	__	__	__	__	__	GG	AC	__	CC	__	AA	__	__
19._GC-01-138-7-17	__	__	__	__	__	__	GG	CC	__	CC	__	AA	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	AA	AG	AC	TT	AA	GG	AA	TT	AA	AA	TT	TT	CC
1._GU_125_/C	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
2._GU_125_/C	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
3._GU_125_/C	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
4._GU_125_/C	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
5._GU_125_/C	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
6._GU_125_/C	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
7._RUQ_188	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
8._RUQ_188	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
9._GU_125_/C	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
10._RUQ_188	CT	AA	GG	AA	CC	GG	GG	GG	CC	AA	AA	TT	GG	CC
11._GC-01-138-7-17	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
12._GC-01-138-7-17	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
13._GC-01-138-7-17	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
14._GC-01-138-7-17	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
15._GC-01-138-7-17	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
16._GC-01-138-7-17	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
17._RUQ_188	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
18._RUQ_188	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
19._GC-01-138-7-17	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__

	57	58	59
_Input profile	TT	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GU_125_/C	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GU_125_/C	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GU_125_/C	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GU_125_/C	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GU_125_/C	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GU_125_/C	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._RUQ_188	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._RUQ_188	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GU_125_/C	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._RUQ_188	TT	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-01-138-7-17	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-01-138-7-17	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-01-138-7-17	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-01-138-7-17	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-01-138-7-17	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-01-138-7-17	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._RUQ_188	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._RUQ_188	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-01-138-7-17	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: SCA_12 RUQ_1689

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

1._GU_125_/C

61.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 4 > FP

Dapeng Zhang, 2016

2._GU_125_/C

61.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 10 > F

Dapeng Zhang, 2016

3._GU_125_/C

61.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 1 > FP

Dapeng Zhang, 2016

4._GU_125_/C

61.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 11

Dapeng Zhang, 2016

5._GU_125_/C

61.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 9

Dapeng Zhang, 2016

6._GU_125_/C

61.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 3

Dapeng Zhang, 2016

7._GU_125_/C RUQ_188

61.5 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._GU_125_/C RUQ_188

61.5 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._GU_125_/C

61.5 %
13 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: Q6_EXT_2 20

Dapeng Zhang, 2016

10._GU_125_/C RUQ_188

61 %
59 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.998

11._GU_125_/C GC-01-138-7-17

59.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

12._GU_125_/C GC-01-138-7-17

59.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

13._GU_125_/C GC-01-138-7-17

59.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

14._GU_125_/C GC-01-138-7-17

59.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

15._GU_125_/C GC-01-138-7-17

59.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

16._GU_125_/C GC-01-138-7-17

59.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

17._GU_125_/C RUQ_188

56.3 %
16 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._GU_125_/C RUQ_188

52.9 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

19._GU_125_/C GC-01-138-7-17

50 %
17 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 7, Rep: 17, Tree: 3

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13