SNP Profiles of PA 7 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
CCACATGTGGCCTTCCCTATTTCGAGAG
1._RUQ_113
CCAAAATTGGCCTTCCTTATTTCGGGAA
2._RUQ_113
__AA__________________CG____
3._PA_7_[PER]
__AA__________________CG____
4._PA_7_[PER]
__AA__________________CG____
5._PA_7_[PER]
__AA__________________CG____
6._PA_7_[PER]
__AA__________________CG____
7._PA_7_[PER]
__AA__________________CG____
8._PA_7_[PER]
__AA__________________CG____
9._PA_7_[PER]
__AA__________________CG____
10._PA_7_[PER]
__AA__________________CG____
11._GC-04-030-2-12
__AA__________________CG____
12._GC-04-030-2-12
__AA__________________CG____
13._GC-04-030-2-12
__AA__________________CG____
14._GC-04-030-2-12
__AA__________________CG____
15._GC-04-030-2-12
__AA__________________CG____
16._RUQ_113
__AA__________________CG____
17._RUQ_113
__AA__________________CG____
 1516171819202122232425262728
_Input profile
TTGTGTAAGGCCCCGGCCAACCCCAACC
1._RUQ_113
TTGGTTAAGGCCTTGGCTAACTCCAGCC
2._RUQ_113
____TT____CC__GG________AG__
3._PA_7_[PER]
____TT____CC__GG________AG__
4._PA_7_[PER]
____TT____CC__GG________AG__
5._PA_7_[PER]
____TT____CC__GG________AG__
6._PA_7_[PER]
____TT____CC__GG________AG__
7._PA_7_[PER]
____TT____CC__GG________AG__
8._PA_7_[PER]
____TT____CC__GG________AG__
9._PA_7_[PER]
____TT____CC__GG________AG__
10._PA_7_[PER]
____TT____CC__GG________AG__
11._GC-04-030-2-12
____TT____CC__GG______CCAG__
12._GC-04-030-2-12
____TT____CC__GG______CCAG__
13._GC-04-030-2-12
____TT____CC__GG______CCAG__
14._GC-04-030-2-12
____TT____CC__GG______CCAG__
15._GC-04-030-2-12
____TT____CC__GG______CCAG__
16._RUQ_113
____TT________________CCAG__
17._RUQ_113
____AA________GG________AG__
 2930313233343536373839404142
_Input profile
GGCCCTATACTTCTGGGGTTCGAACCAG
1._RUQ_113
GGGGTTAAAATTCTAGGGCCCCAACCGG
2._RUQ_113
__GG____________GG____AA____
3._PA_7_[PER]
__GG____________GG____AG____
4._PA_7_[PER]
__GG____________GG____AG____
5._PA_7_[PER]
__GG____________GG____AG____
6._PA_7_[PER]
__GG____________GG____AG____
7._PA_7_[PER]
__GG____________GG____AG____
8._PA_7_[PER]
__GG____________GG____AG____
9._PA_7_[PER]
__GG____________GG____AG____
10._PA_7_[PER]
__GG____________GG____AG____
11._GC-04-030-2-12
GGGGGG__AA____AGGGCC__AG____
12._GC-04-030-2-12
GGGGGG__AA____AGGGCC__AG____
13._GC-04-030-2-12
GGGGGG__AA____AGGGCC__AG____
14._GC-04-030-2-12
GGGGGG__AA____AGGGCC__AG____
15._GC-04-030-2-12
GGGGGG__AA____AGGGCC__AG____
16._RUQ_113
GGGG____AA____AGGGCC________
17._RUQ_113
GGCCCC__AA____AGCC__________
 4344454647484950515253545556
_Input profile
TTCCACTTGGAGACCCAACCAAAGAATT
1._RUQ_113
CCCCCCAAGGAAAACCACCTAAGGAATT
2._RUQ_113
____CC__GG__AA______________
3._PA_7_[PER]
____CC__GG__AA______________
4._PA_7_[PER]
____CC__GG__AA______________
5._PA_7_[PER]
____CC__GG__AA______________
6._PA_7_[PER]
____CC__GG__AA______________
7._PA_7_[PER]
____CC__GG__AA______________
8._PA_7_[PER]
____CC__GG__AA______________
9._PA_7_[PER]
____CC__GG__AA______________
10._PA_7_[PER]
____CC__GG__AA______________
11._GC-04-030-2-12
__CCCC__GG__AA________GG____
12._GC-04-030-2-12
__CCCC__GG__AA________GG____
13._GC-04-030-2-12
__CCCC__GG__AA________GG____
14._GC-04-030-2-12
__CCCC__GG__AA________GG____
15._GC-04-030-2-12
__CCCC__GG__AA________GG____
16._RUQ_113
__CCCC__GG__AA________GG____
17._RUQ_113
__GGCC__GG__AA________GG____
 575859           
_Input profile
AAGTAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_113
AGGGGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_113
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._PA_7_[PER]
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._PA_7_[PER]
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._PA_7_[PER]
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_7_[PER]
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._PA_7_[PER]
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._PA_7_[PER]
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_7_[PER]
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._PA_7_[PER]
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-04-030-2-12
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-04-030-2-12
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-04-030-2-12
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-04-030-2-12
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-04-030-2-12
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._RUQ_113
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._RUQ_113
AG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: POUND_18 RUQ_874

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._PA_7_[PER] RUQ_113

69.5 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._PA_7_[PER] RUQ_113

69.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._PA_7_[PER]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 7 > FP
 Dapeng Zhang, 2016

4._PA_7_[PER]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 8
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._PA_7_[PER]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 1 > FP
 Dapeng Zhang, 2016

6._PA_7_[PER]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 2 > FP
 Dapeng Zhang, 2016

7._PA_7_[PER]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 3 > FP
 Dapeng Zhang, 2016

8._PA_7_[PER]

65.4 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P61 842
 Dapeng Zhang, 2016

9._PA_7_[PER]

65.4 %
13 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 185 I-033
 Dapeng Zhang, 2016

10._PA_7_[PER]

65.4 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 2 C0214 27
 Dapeng Zhang, 2016

11._PA_7_[PER] GC-04-030-2-12

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._PA_7_[PER] GC-04-030-2-12

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

13._PA_7_[PER] GC-04-030-2-12

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

14._PA_7_[PER] GC-04-030-2-12

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

15._PA_7_[PER] GC-04-030-2-12

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._PA_7_[PER] RUQ_113

61.8 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_7_[PER] RUQ_113

55.9 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP176 2TcSNP144 3TcSNP143 4TcSNP131 5TcSNP52
6TcSNP49 7TcSNP33 8TcSNP19 9TcSNP13 10TcSNP1527
11TcSNP1524 12TcSNP1458 13TcSNP1404 14TcSNP1401 15TcSNP1293
16TcSNP1275 17TcSNP1253 18TcSNP1230 19TcSNP1205 20TcSNP1144
21TcSNP1112 22TcSNP1062 23TcSNP1053 24TcSNP1019 25TcSNP1010
26TcSNP999 27TcSNP998 28TcSNP945 29TcSNP899 30TcSNP872
31TcSNP836 32TcSNP835 33TcSNP823 34TcSNP800 35TcSNP739
36TcSNP731 37TcSNP723 38TcSNP702 39TcSNP660 40TcSNP645
41TcSNP644 42TcSNP642 43TcSNP640 44TcSNP602 45TcSNP591
46TcSNP589 47TcSNP577 48TcSNP546 49TcSNP529 50TcSNP522
51TcSNP519 52TcSNP421 53TcSNP363 54TcSNP329 55TcSNP305
56TcSNP290 57TcSNP230 58TcSNP194 59TcSNP189