SNP Profiles of PA 175 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
ATTTCGGGAGTTGGTTAAGTCCTTGGCC
1._RUQ_37
____CG________TT____CC__AG__
2._PA_175_[PER]
____CG________TT____CC__AG__
3._PA_175_[PER]
____CG________TT____CC__AG__
4._RUQ_37
TTCTCGGGGGTTGGTTAAGGCCCTAGCC
5._RUQ_37
____CG________TT____________
6._PA_175_[PER]
____CG________TT____CC__AG__
7._PA_175_[PER]
____CG________TT____CC__AG__
8._PA_175_[PER]
____CG________TT____CC__AG__
9._PA_175_[PER]
____CG________TT____CC__AG__
10._NA
____CG________TT____CC__AG__
11._NA
____CG________TT____CC__AG__
12._NA
____CG________TT____CC__AG__
13._NA
____CG________TT____CC__AG__
14._-
____CG________AA________AG__
15._RUQ_37
____CG________AA________AG__
16._MITC-000016
____CG________AA________AG__
 1516171819202122232425262728
_Input profile
AATTCTAGCCAGGGTTAAAATTCCGGGG
1._RUQ_37
______AA____GG____________GG
2._PA_175_[PER]
______AA____GG____________GG
3._PA_175_[PER]
______AA____GGTT____________
4._RUQ_37
AATTCTAACCAGGGTTAAAATTCTAGGG
5._RUQ_37
____CCAA____GG____AA____AGGG
6._PA_175_[PER]
______AA____GG____________GG
7._PA_175_[PER]
______AA____GG____________GG
8._PA_175_[PER]
______AA____GG____________GG
9._PA_175_[PER]
______AA____GG____________GG
10._NA
____CTAA__AGGGCG__AA____AGGG
11._NA
____CTAA__AGGGCG__AA____AGGG
12._NA
____CTAA__AGGGCG__AA____AGGG
13._NA
____CTAA__AGGGCG__AA____AGGG
14._-
______AA__AGCCCG__AA____AGCC
15._RUQ_37
______AA__AGCCCG__AA____AGCC
16._MITC-000016
______AA__AGCCCG__AA____AGCC
 2930313233343536373839404142
_Input profile
CCCCAACCGGCTCTACATCGAGAACCAA
1._RUQ_37
____AA________AC__CG__AC____
2._PA_175_[PER]
____AA________AC__CG__AC____
3._PA_175_[PER]
____AA________AC__CG__AC____
4._RUQ_37
CTGGAACCAGCCTTACAACGAGAACCAC
5._RUQ_37
CT__________TTAC__CG__AC____
6._PA_175_[PER]
____GG________AC__CG__AC____
7._PA_175_[PER]
____GG________AC__CG__AC____
8._PA_175_[PER]
____GG________AC__CG__AC____
9._PA_175_[PER]
____GG________AC__CG__AC____
10._NA
CC__GG______TTAC__CG__AC____
11._NA
CC__GG______TTAC__CG__AC____
12._NA
CC__GG______TTAC__CG__AC____
13._NA
CC__GG______TTAC__CG__AC____
14._-
____________AAAC__CG__AC____
15._RUQ_37
____________AAAC__CG__AC____
16._MITC-000016
____________AAAC__CG__AC____
 4344454647484950515253545556
_Input profile
CTAAGGAATTGGGGGGCCACAAGTGGCC
1._RUQ_37
__________GG______CC________
2._PA_175_[PER]
__________GG______CC________
3._PA_175_[PER]
__________GG______CC________
4._RUQ_37
CTAAGGAACTGGGGGGCCCCAAGGGGCC
5._RUQ_37
____GG____GG______CC________
6._PA_175_[PER]
__________GG______CC________
7._PA_175_[PER]
__________GG______CC________
8._PA_175_[PER]
__________GG______CC________
9._PA_175_[PER]
__________GG______CC________
10._NA
____GG____GG______CC________
11._NA
____GG____GG______CC________
12._NA
____GG____GG______CC________
13._NA
____GG____GG______CC________
14._-
____GG____GG______CC________
15._RUQ_37
____GG____GG______CC________
16._MITC-000016
____GG____GG______CC________
 575859           
_Input profile
CTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_37
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._PA_175_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._PA_175_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RUQ_37
CTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._RUQ_37
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_175_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._PA_175_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._PA_175_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_175_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._NA
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._NA
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._NA
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._NA
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._-
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._RUQ_37
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._MITC-000016
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_88_[PER] RUQ_34

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._PA_175_[PER] RUQ_37

84.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_175_[PER]

84.6 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

3._PA_175_[PER]

84.6 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

4._PA_175_[PER] RUQ_37

83.1 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

5._PA_175_[PER] RUQ_37

78.1 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._PA_175_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._PA_175_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

8._PA_175_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

9._PA_175_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

10._PA_175_[PER] NA

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._PA_175_[PER] NA

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._PA_175_[PER] NA

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._PA_175_[PER] NA

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

14._PA_175_[PER] -

55.9 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 27, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._PA_175_[PER] RUQ_37

55.9 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._PA_175_[PER] MITC-000016

55.9 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13