SNP Profiles of PA 56 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
ATTTCGGGGGTTGGTTAAGTCCTTGGCT
1._RUQ_32
TTCTCGGGGGTTGGTTAAGTCCCTGGCC
2._RUQ_32
____CG________TT____CC__GG__
3._PA_56_[PER]
____CG________TT____CC__GG__
4._RUQ_32
____CG________TT____________
5._PA_56_[PER]
____CG________TT____CC__GG__
6._PA_56_[PER]
____CG________TT____CC__GG__
7._PA_56_[PER]
____CG________TT____CC__GG__
8._PA_56_[PER]
____CG________TT____CC__GG__
9._PA_56_[PER]
____CG________TT____CC__GG__
10._NA
____CG________TT____CC__GG__
11._NA
____CG________TT____CC__GG__
12._NA
____CG________TT____CC__GG__
13._NA
____CG________TT____CC__GG__
14._NA
____CG________TT____CC__GG__
15._-
____CG________AA________GG__
 1516171819202122232425262728
_Input profile
AACTCCAACGAGCGTTAAAATTCCGGGT
1._RUQ_32
AATT__AGCCGGGGTTAAAATTTTAGGG
2._RUQ_32
______AG____GG____________GG
3._PA_56_[PER]
______AG____GG____________GG
4._RUQ_32
____CCAG____GG____AA____AGGG
5._PA_56_[PER]
______AG____GG____________GG
6._PA_56_[PER]
______AG____GG____________GG
7._PA_56_[PER]
______AG____GG____________GG
8._PA_56_[PER]
______AG____GG____________GG
9._PA_56_[PER]
______AG____GG____________GG
10._NA
____CTAG__GGGGCG__AA____AGGG
11._NA
____CTAG__GGGGCG__AA____AGGG
12._NA
____CTAG__GGGGCG__AA____AGGG
13._NA
____CTAG__GGGGCG__AA____AGGG
14._NA
____CTAG__GGGGCG__AA____AGGG
15._-
______AG__GGCCCG__AA____AGCC
 2930313233343536373839404142
_Input profile
CTCCAACCGGCCCCACAACGAGAACCAA
1._RUQ_32
CTCGAACCGGCT__CCATCGGGAACCAA
2._RUQ_32
____AA________CC__CG__AC____
3._PA_56_[PER]
____AA________CC__CG__AC____
4._RUQ_32
CT__________TTCC__CG__AC____
5._PA_56_[PER]
____GG________CC__CG__AC____
6._PA_56_[PER]
____GG________CC__CG__AC____
7._PA_56_[PER]
____GG________CC__CG__AC____
8._PA_56_[PER]
____GG________CC__CG__AC____
9._PA_56_[PER]
____GG________CC__CG__AC____
10._NA
CC__GG______TTCC__CG__AC____
11._NA
CC__GG______TTCC__CG__AC____
12._NA
CC__GG______TTCC__CG__AC____
13._NA
CC__GG______TTCC__CG__AC____
14._NA
CC__GG______TTCC__CG__AC____
15._-
____________AACC__CG__AC____
 4344454647484950515253545556
_Input profile
CTACGGAACTAAGGAGCCACAAGTGGCC
1._RUQ_32
CCAAGGAATTAGGGGGCCCCATGGGGCC
2._RUQ_32
__________AG______CC________
3._PA_56_[PER]
__________AG______CC________
4._RUQ_32
____GG____AG______CC________
5._PA_56_[PER]
__________AG______CC________
6._PA_56_[PER]
__________AG______CC________
7._PA_56_[PER]
__________AG______CC________
8._PA_56_[PER]
__________AG______CC________
9._PA_56_[PER]
__________AG______CC________
10._NA
____GG____AG______CC________
11._NA
____GG____AG______CC________
12._NA
____GG____AG______CC________
13._NA
____GG____AG______CC________
14._NA
____GG____AG______CC________
15._-
____GG____AG______CC________
 575859           
_Input profile
TTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_32
CTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_32
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._PA_56_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RUQ_32
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._PA_56_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_56_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._PA_56_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._PA_56_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_56_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._NA
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._NA
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._NA
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._NA
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._NA
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._-
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_67_[PER] RUQ_590B

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._PA_56_[PER] RUQ_32

75.4 %
57 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._PA_56_[PER] RUQ_32

73.1 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._PA_56_[PER]

73.1 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

4._PA_56_[PER] RUQ_32

68.8 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._PA_56_[PER]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

6._PA_56_[PER]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

7._PA_56_[PER]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

8._PA_56_[PER]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

9._PA_56_[PER]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._PA_56_[PER] NA

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

11._PA_56_[PER] NA

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

12._PA_56_[PER] NA

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._PA_56_[PER] NA

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._PA_56_[PER] NA

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._PA_56_[PER] -

52.9 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 76, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13