SNP Profiles of EET 272 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
TTATCTCCGGAGTTTTAAGTCCCTAGCC
1._GC-03-032-3-11
______GG______TT____CC__AG__
2._GC-03-032-3-11
______GG______TT____CC__AG__
3._EET_272_[ECU]
______GG______TT____CC__AG__
4._EET_272_[ECU]
______GG______TT____CC__AG__
5._RUQ_6
TTATCTCCGGGGATTTAAGTCCCCGGCC
6._EET_272_[ECU]
______________TT____CT______
7._GC-03-32-3-11
______CC______AA________AG__
8._EET_272_[ECU]
______CC______TT____CC__GG__
9._EET_272_[ECU]
______CC______TT____CC__GG__
10._EET_272_[ECU]
______CC______TT____CC__GG__
11._EET_272_[ECU]
______CC______TT____CC__GG__
12._EET_272_[ECU]
______CC______TT____CC__GG__
13._EET_272_[ECU]
______CC______TT____CC__GG__
14._EET_272_[ECU]
______CC______TT____CC__GG__
15._EET_272_[ECU]
______CC______TT____CC__GG__
16._GC-03-032-3-11
______CC______TT____CC__GG__
17._GC-03-032-3-11
______CC______TT____CC__GG__
18._GC-03-032-3-11
______CC______TT____CC__GG__
19._GC-03-032-3-11
______CC______TT____CC__GG__
20._GC-03-032-3-11
______CC______TT____CC__GG__
21._GC-03-032-3-11
______CC______TT____CC__GG__
22._GC-03-032-3-11
______CC______TT____CC__GG__
23._GC-03-032-3-11
______CC______TT____CC__GG__
24._RUQ_6
______CC______TT____________
25._RUQ_6
______GG______AA________GG__
26._MITC-000381
______GG______AA________GG__
 1516171819202122232425262728
_Input profile
AATTCCAACCGGGGTTAAAATTCTAGGG
1._GC-03-032-3-11
____CCAG__GGGGCG__AA____AGGG
2._GC-03-032-3-11
____CCAG__GGGGCG__AA____AGGG
3._EET_272_[ECU]
______AG____GG____________GG
4._EET_272_[ECU]
______AG____GG____________GG
5._RUQ_6
AACTCTAGCGGGCCTTATACTTTTGGGG
6._EET_272_[ECU]
______AG__________________GG
7._GC-03-32-3-11
______AG__GGCCCG__AA____AGCC
8._EET_272_[ECU]
______AG____CC____________GG
9._EET_272_[ECU]
______AG____CC____________GG
10._EET_272_[ECU]
______AG____CC____________GG
11._EET_272_[ECU]
______AG____CC____________GG
12._EET_272_[ECU]
______AG____CC____________GG
13._EET_272_[ECU]
______AG____CC____________GG
14._EET_272_[ECU]
______AG____CC____________GG
15._EET_272_[ECU]
______AG____CC____________GG
16._GC-03-032-3-11
____CTAG__GGCCGG__AC____GGGG
17._GC-03-032-3-11
____CTAG__GGCCGG__AC____GGGG
18._GC-03-032-3-11
____CTAG__GGCCGG__AC____GGGG
19._GC-03-032-3-11
____CTAG__GGCCGG__AC____GGGG
20._GC-03-032-3-11
____CTAG__GGCCGG__AC____GGGG
21._GC-03-032-3-11
____CTAG__GGCCGG__AC____GGGG
22._GC-03-032-3-11
____CTAG__GGCCGG__AC____GGGG
23._GC-03-032-3-11
____CTAG__GGCCGG__AC____GGGG
24._RUQ_6
______AG____CC____AC____GGGG
25._RUQ_6
______AG__GGGGCC__AC____GGCC
26._MITC-000381
______AG__GGGGCC__AC____GGCC
 2930313233343536373839404142
_Input profile
CCCCAACCAGCTCTCCATCGAGACCCAA
1._GC-03-032-3-11
CT__AG______CTCC__CG__AC____
2._GC-03-032-3-11
CT__AG______CTCC__CG__AC____
3._EET_272_[ECU]
____AG________CC__CG__AC____
4._EET_272_[ECU]
____AG________CC__CG__AC____
5._RUQ_6
TTCCAACCAATTCC__TTGGAGACCCAA
6._EET_272_[ECU]
____AA________AA____________
7._GC-03-32-3-11
____________AGCC__CG__AC____
8._EET_272_[ECU]
____AA________AA__GG__CC____
9._EET_272_[ECU]
____AA________AA__GG__CC____
10._EET_272_[ECU]
____AA________AA__GG__CC____
11._EET_272_[ECU]
____AA________AA__GG__CC____
12._EET_272_[ECU]
____AA________AA__GG__CC____
13._EET_272_[ECU]
____AA________AA__GG__CC____
14._EET_272_[ECU]
____AA________AA__GG__CC____
15._EET_272_[ECU]
____AA________AA__GG__CC____
16._GC-03-032-3-11
CC__AA______CCAA__GG__CC____
17._GC-03-032-3-11
CC__AA______CCAA__GG__CC____
18._GC-03-032-3-11
CC__AA______CCAA__GG__CC____
19._GC-03-032-3-11
CC__AA______CCAA__GG__CC____
20._GC-03-032-3-11
CC__AA______CCAA__GG__CC____
21._GC-03-032-3-11
CC__AA______CCAA__GG__CC____
22._GC-03-032-3-11
CC__AA______CCAA__GG__CC____
23._GC-03-032-3-11
CC__AA______CCAA__GG__CC____
24._RUQ_6
TT__________CCAA__GG__CC____
25._RUQ_6
____________GGAA__GG__CC____
26._MITC-000381
____________GGAA__GG__CC____
 4344454647484950515253545556
_Input profile
TTAAGGAATTAGGGGGCCAAAAGTGGCC
1._GC-03-032-3-11
____GG____AG______CC________
2._GC-03-032-3-11
____GG____AG______CC________
3._EET_272_[ECU]
__________AG______CC________
4._EET_272_[ECU]
__________AG______CC________
5._RUQ_6
CCACAGAATTAAGGGGCTACATTTGGCC
6._EET_272_[ECU]
__________AA______AC________
7._GC-03-32-3-11
____GG____AG______CC________
8._EET_272_[ECU]
__________AA______AC________
9._EET_272_[ECU]
__________AA______AC________
10._EET_272_[ECU]
__________AA______AC________
11._EET_272_[ECU]
__________AA______AC________
12._EET_272_[ECU]
__________AA______AC________
13._EET_272_[ECU]
__________AA______AC________
14._EET_272_[ECU]
__________AA______AC________
15._EET_272_[ECU]
__________AA______AC________
16._GC-03-032-3-11
____AG____AA______AC________
17._GC-03-032-3-11
____AG____AA______AC________
18._GC-03-032-3-11
____AG____AA______AC________
19._GC-03-032-3-11
____AG____AA______AC________
20._GC-03-032-3-11
____AG____AA______AC________
21._GC-03-032-3-11
____AG____AA______AC________
22._GC-03-032-3-11
____AG____AA______AC________
23._GC-03-032-3-11
____AG____AA______AC________
24._RUQ_6
____AG____AA______AC________
25._RUQ_6
____AG____AA______AC________
26._MITC-000381
____AG____AA______AC________
 5758            
_Input profile
TTCCX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-03-032-3-11
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-03-032-3-11
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._EET_272_[ECU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._EET_272_[ECU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._RUQ_6
TTACX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._EET_272_[ECU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-03-32-3-11
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._EET_272_[ECU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._EET_272_[ECU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._EET_272_[ECU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._EET_272_[ECU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._EET_272_[ECU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._EET_272_[ECU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._EET_272_[ECU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._EET_272_[ECU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-032-3-11
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-03-032-3-11
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-032-3-11
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-03-032-3-11
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-032-3-11
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-03-032-3-11
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-03-032-3-11
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-03-032-3-11
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._RUQ_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._RUQ_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._MITC-000381
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_4_[PER] RUQ_1058

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._EET_272_[ECU] GC-03-032-3-11

78.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._EET_272_[ECU] GC-03-032-3-11

78.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._EET_272_[ECU]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._EET_272_[ECU]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

5._EET_272_[ECU] RUQ_6

72.8 %
57 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

6._EET_272_[ECU]

62.5 %
8 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

7._EET_272_[ECU] GC-03-32-3-11

61.8 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

8._EET_272_[ECU]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

9._EET_272_[ECU]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._EET_272_[ECU]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

11._EET_272_[ECU]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

12._EET_272_[ECU]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

13._EET_272_[ECU]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

14._EET_272_[ECU]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

15._EET_272_[ECU]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

16._EET_272_[ECU] GC-03-032-3-11

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

17._EET_272_[ECU] GC-03-032-3-11

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._EET_272_[ECU] GC-03-032-3-11

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

19._EET_272_[ECU] GC-03-032-3-11

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._EET_272_[ECU] GC-03-032-3-11

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

21._EET_272_[ECU] GC-03-032-3-11

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._EET_272_[ECU] GC-03-032-3-11

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

23._EET_272_[ECU] GC-03-032-3-11

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._EET_272_[ECU] RUQ_6

50 %
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._EET_272_[ECU] RUQ_6

38.2 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._EET_272_[ECU] MITC-000381

38.2 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP1527 3TcSNP1524 4TcSNP1458 5TcSNP1404
6TcSNP1401 7TcSNP1293 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19