SNP Profiles of PA 156/T1   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCTGGGGGGTTGGTTAAGGCCCTGGCC
1._PA_156_[PER]___
____GG________TT____CC__GG__
2._PA_156_[PER]___
____GG________TT____CC__GG__
3._PA_156_[PER]___
____GG________TT____CC__GG__
4._PA_156_[PER]___
____GG________TT____CC__GG__
5._PA_156_[PER]___
____GG________TT____CC__GG__
6._PA_156_[PER]___
____GG________TT____CC__GG__
7._PA_156_[PER]___
____GG________TT____CC__GG__
8._PA_156_[PER]___
____GG________TT____CC__GG__
9._PA_156_[PER]___
____GG________TT________GG__
10._PA_156_[PER]___
____GG________TT____________
11._PA_156_[PER]___
____GG________TT____CC__GG__
12._PA_156_[PER]___
____GG________TT____CC__GG__
13._PA_156_[PER]___
____GG________TT____CC__GG__
14._PA_156_[PER]___
____GG________TT____CC__GG__
15._PA_156_[PER]___
____CC______________________
16._PA_156_[PER]___
____CC________AA________GG__
17._PA_156_[PER]___
____GG________TT____TT__AA__
18._PA_156_[PER]___
____GG________TT____TT__AA__
19._PA_156_[PER]___
____GG________TT____TT__AA__
20._PA_156_[PER]___
____GG________TT____TT__AA__
21._PA_156_[PER]___
____GG________TT____TT__AA__
22._PA_156_[PER]___
____GG________TT____TT__AA__
23._PA_156_[PER]___
____GG________TT____TT__AA__
24._PA_156_[PER]___
____GG________TT____TT__AA__
25._PA_156_[PER]___
____GG________TT____TT__AA__
26._PA_156_[PER]___
____GG________TT____TT__AA__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACTCTAGCCAGGGTTAAACTTTTGGGG
1._PA_156_[PER]___
____CTAG__AGGG____AC____GGGG
2._PA_156_[PER]___
______AG____GG____________GG
3._PA_156_[PER]___
______AG____GG____________GG
4._PA_156_[PER]___
______AG____GG____________GG
5._PA_156_[PER]___
______AG____GG____________GG
6._PA_156_[PER]___
______AG____GG____________GG
7._PA_156_[PER]___
______AG____GG____________GG
8._PA_156_[PER]___
______AG____GG____________GG
9._PA_156_[PER]___
______AG____GG____________GG
10._PA_156_[PER]___
______AG__GGGG____AC____GGGG
11._PA_156_[PER]___
____CTAG__AGGGCC__AC____GGGG
12._PA_156_[PER]___
____CTAG__AGGGCC__AC____GGGG
13._PA_156_[PER]___
____CTAG__AGGGCC__AC____GGGG
14._PA_156_[PER]___
____CTAG__AGGGCC__AC____GGGG
15._PA_156_[PER]___
____________CC______________
16._PA_156_[PER]___
______AG__AGCCGG__AC____GGCC
17._PA_156_[PER]___
______AG____CG____________GG
18._PA_156_[PER]___
______AG____CG____________GG
19._PA_156_[PER]___
______AG____CG____________GG
20._PA_156_[PER]___
______AG____CG____________GG
21._PA_156_[PER]___
______AG____CG____________GG
22._PA_156_[PER]___
____TTAG__AACGGG__AA____GGGG
23._PA_156_[PER]___
____TTAG__AACGGG__AA____GGGG
24._PA_156_[PER]___
____TTAG__AACGGG__AA____GGGG
25._PA_156_[PER]___
____TTAG__AACGGG__AA____GGGG
26._PA_156_[PER]___
____TTAG__AACGGG__AA____GGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CTCGAACCGGCCTTCCAACGAGACCTAA
1._PA_156_[PER]___
CT__AA______TTCC__CG__AC____
2._PA_156_[PER]___
____AA________CC__CG__AC____
3._PA_156_[PER]___
____AA________CC__CG__AC____
4._PA_156_[PER]___
____AA________CC__CG__AC____
5._PA_156_[PER]___
____AA________CC__CG__AC____
6._PA_156_[PER]___
____AA________CC__CG__AC____
7._PA_156_[PER]___
____AA________CC__CG__AC____
8._PA_156_[PER]___
____AA________CC__CG__AC____
9._PA_156_[PER]___
____AA________CC__CG__AC____
10._PA_156_[PER]___
CT__________TTCC__CG__AC____
11._PA_156_[PER]___
CT__AA______TTCC__CG__AC____
12._PA_156_[PER]___
CT__AA______TTCC__CG__AC____
13._PA_156_[PER]___
CT__AA______TTCC__CG__AC____
14._PA_156_[PER]___
CT__AA______TTCC__CG__AC____
15._PA_156_[PER]___
____________TTCC__CG________
16._PA_156_[PER]___
____________AACC__CG__AC____
17._PA_156_[PER]___
____AG________AA__CG__CC____
18._PA_156_[PER]___
____AG________AA__CG__CC____
19._PA_156_[PER]___
____AG________AA__CG__CC____
20._PA_156_[PER]___
____AG________AA__CG__CC____
21._PA_156_[PER]___
____AG________AA__CG__CC____
22._PA_156_[PER]___
CC__AG______CTAA__CG__CC____
23._PA_156_[PER]___
CC__AG______CTAA__CG__CC____
24._PA_156_[PER]___
CC__AG______CTAA__CG__CC____
25._PA_156_[PER]___
CC__AG______CTAA__CG__CC____
26._PA_156_[PER]___
CC__AG______CTAA__CG__CC____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCAAGGAACTAAGGGGCCACTTGTGGCC
1._PA_156_[PER]___
____GG____AA______AC________
2._PA_156_[PER]___
__________AA______AC________
3._PA_156_[PER]___
__________AA______AC________
4._PA_156_[PER]___
__________AA______AC________
5._PA_156_[PER]___
__________AA______AC________
6._PA_156_[PER]___
__________AA______AC________
7._PA_156_[PER]___
__________AA______AC________
8._PA_156_[PER]___
__________AA______AC________
9._PA_156_[PER]___
__________AA______AC________
10._PA_156_[PER]___
____GG____AA______AC________
11._PA_156_[PER]___
____GG____AA______AC________
12._PA_156_[PER]___
____GG____AA______AC________
13._PA_156_[PER]___
____GG____AA______AC________
14._PA_156_[PER]___
____GG____AA______AC________
15._PA_156_[PER]___
__________AA______AC________
16._PA_156_[PER]___
____GG____AA______AC________
17._PA_156_[PER]___
__________AA______AA________
18._PA_156_[PER]___
__________AA______AA________
19._PA_156_[PER]___
__________AA______AA________
20._PA_156_[PER]___
__________AA______AA________
21._PA_156_[PER]___
__________AA______AA________
22._PA_156_[PER]___
____GG____AA______AA________
23._PA_156_[PER]___
____GG____AA______AA________
24._PA_156_[PER]___
____GG____AA______AA________
25._PA_156_[PER]___
____GG____AA______AA________
26._PA_156_[PER]___
____GG____AA______AA________
 57 58 59            
_Input profile
CCCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._PA_156_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_156_[PER] RUQ_1531

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._PA_156_[PER] GC-05-137-3-39

identical
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._PA_156_[PER]

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

3._PA_156_[PER]

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

4._PA_156_[PER]

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

5._PA_156_[PER]

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

7._PA_156_[PER] RUQ_1531

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

10._PA_156_[PER] RUQ_1531

96.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_156_[PER] GC-05-137-3-39

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

12._PA_156_[PER] GC-05-137-3-39

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

13._PA_156_[PER] GC-05-137-3-39

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._PA_156_[PER] GC-05-137-3-39

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._PA_156_[PER] PA156[PER]

71.4 %
7 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

16._PA_156_[PER] RUQ_1531

64.7 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

17._PA_156_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

18._PA_156_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

19._PA_156_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

20._PA_156_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

21._PA_156_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

22._PA_156_[PER] GC-05-138-3-40

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

23._PA_156_[PER] GC-05-138-3-40

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

24._PA_156_[PER] GC-05-138-3-40

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

25._PA_156_[PER] GC-05-138-3-40

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

26._PA_156_[PER] GC-05-138-3-40

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13