SNP Profiles of PA 121 [PER] View Data

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_Input profile	AT	CT	GG	GG	GG	TT	GG	TT	AA	GG	CC	CT	GG	CC
1._RUQ_1059	__	__	GG	__	__	__	__	TT	__	__	__	__	__	__
2._PA_121_[PER]	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
3._PA_121_[PER]	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
4._PA_121_[PER]	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
5._RUQ_1059	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
6._PA_121_[PER]	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
7._PA_121_[PER]	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
8._PA_121_[PER]	__	__	GG	__	__	__	__	TT	__	__	__	__	GG	__
9._GC-05-011-1-11	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
10._GC-05-011-1-11	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
11._GC-05-011-1-11	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
12._PA_121_[PER]	__	__	CG	__	__	__	__	TT	__	__	CT	__	AG	__
13._RUQ_1059	__	__	CC	__	__	__	__	__	__	__	__	__	__	__
14._PA_121_[PER]	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
15._GC-05-011-1-11	__	__	CG	__	__	__	__	TT	__	__	CT	__	AG	__
16._RUQ_1059	__	__	CC	__	__	__	__	AA	__	__	__	__	GG	__
17._GC-05-011-1-11	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	TT	CC	AG	GG	GG	TT	AA	AA	TT	CT	AG	GG	CC
1._RUQ_1059	__	__	CC	AG	__	GG	__	__	AA	__	__	AG	GG	CC
2._PA_121_[PER]	__	__	__	AG	__	GG	__	__	__	__	__	__	GG	__
3._PA_121_[PER]	__	__	__	AG	__	GG	__	__	__	__	__	__	GG	__
4._PA_121_[PER]	__	__	__	AG	__	GG	__	__	__	__	__	__	GG	__
5._RUQ_1059	__	__	__	AG	__	GG	__	__	__	__	__	__	GG	__
6._PA_121_[PER]	__	__	__	AG	__	GG	__	__	__	__	__	__	GG	__
7._PA_121_[PER]	__	__	__	AG	__	GG	__	__	__	__	__	__	GG	__
8._PA_121_[PER]	__	__	__	AG	__	GG	__	__	__	__	__	__	GG	__
9._GC-05-011-1-11	__	__	CC	AG	GG	GG	CG	__	AA	__	__	AG	GG	CC
10._GC-05-011-1-11	__	__	CC	AG	GG	GG	CG	__	AA	__	__	AG	GG	CC
11._GC-05-011-1-11	__	__	CC	AG	GG	GG	CG	__	AA	__	__	AG	GG	CC
12._PA_121_[PER]	__	__	__	AG	__	GG	__	__	__	__	__	__	GG	__
13._RUQ_1059	__	__	__	__	__	CC	__	__	__	__	__	__	__	__
14._PA_121_[PER]	__	__	__	AG	__	GG	__	__	__	__	__	__	GT	__
15._GC-05-011-1-11	__	__	TT	AG	AA	GG	CG	__	AA	__	__	AG	GG	CC
16._RUQ_1059	__	__	__	AG	GG	CC	CG	__	AA	__	__	AG	CC	__
17._GC-05-011-1-11	__	__	CT	AG	AG	GG	CG	__	CC	__	__	AG	GT	TT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	AA	CC	GG	CC	TT	CC	AA	CG	AG	AA	CC	AA	CT
1._RUQ_1059	__	__	__	__	__	TT	CC	__	CG	__	AA	__	__	__
2._PA_121_[PER]	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
3._PA_121_[PER]	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
4._PA_121_[PER]	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
5._RUQ_1059	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
6._PA_121_[PER]	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
7._PA_121_[PER]	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
8._PA_121_[PER]	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
9._GC-05-011-1-11	__	AA	__	__	__	TT	CC	__	CG	__	AA	__	__	__
10._GC-05-011-1-11	__	AA	__	__	__	TT	CC	__	CG	__	AA	__	__	__
11._GC-05-011-1-11	__	AA	__	__	__	TT	CC	__	CG	__	AA	__	__	__
12._PA_121_[PER]	__	AA	__	__	__	__	CC	__	CC	__	CC	__	__	__
13._RUQ_1059	__	__	__	__	__	TT	CC	__	CG	__	__	__	__	__
14._PA_121_[PER]	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__	__
15._GC-05-011-1-11	__	AA	__	__	__	TT	CC	__	CC	__	CC	__	__	__
16._RUQ_1059	__	__	__	__	__	AA	CC	__	CG	__	AA	__	__	__
17._GC-05-011-1-11	__	AA	__	__	__	CT	CC	__	GG	__	CC	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	AA	TT	AA	GG	GG	CC	AC	AA	TT	GG	CC	CT
1._RUQ_1059	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__
2._PA_121_[PER]	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
3._PA_121_[PER]	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
4._PA_121_[PER]	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
5._RUQ_1059	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
6._PA_121_[PER]	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
7._PA_121_[PER]	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
8._PA_121_[PER]	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
9._GC-05-011-1-11	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__
10._GC-05-011-1-11	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__
11._GC-05-011-1-11	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__
12._PA_121_[PER]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
13._RUQ_1059	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
14._PA_121_[PER]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
15._GC-05-011-1-11	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
16._RUQ_1059	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__
17._GC-05-011-1-11	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__

	57	58
_Input profile	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1059	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._PA_121_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._PA_121_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._PA_121_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._RUQ_1059	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._PA_121_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._PA_121_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._PA_121_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-05-011-1-11	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-05-011-1-11	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-05-011-1-11	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._PA_121_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._RUQ_1059	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._PA_121_[PER]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-05-011-1-11	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._RUQ_1059	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-05-011-1-11	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PA_121_[PER] RUQ_1059

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

1._PA_121_[PER] RUQ_1059

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._PA_121_[PER]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

3._PA_121_[PER]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

4._PA_121_[PER]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

5._PA_121_[PER] RUQ_1059

identical
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

6._PA_121_[PER]

identical
13 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

7._PA_121_[PER]

identical
13 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

8._PA_121_[PER]

identical
12 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

9._PA_121_[PER] GC-05-011-1-11

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

10._PA_121_[PER] GC-05-011-1-11

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._PA_121_[PER] GC-05-011-1-11

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._PA_121_[PER]

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 4

Dapeng Zhang, 2016

13._PA_121_[PER] RUQ_1059

71.4 %
7 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

14._PA_121_[PER]

69.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

15._PA_121_[PER] GC-05-011-1-11

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

16._PA_121_[PER] RUQ_1059

64.7 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

17._PA_121_[PER] GC-05-011-1-11

59.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP899	20	TcSNP872
21	TcSNP836	22	TcSNP835	23	TcSNP823	24	TcSNP800	25	TcSNP739
26	TcSNP731	27	TcSNP723	28	TcSNP702	29	TcSNP660	30	TcSNP645
31	TcSNP644	32	TcSNP642	33	TcSNP640	34	TcSNP602	35	TcSNP591
36	TcSNP589	37	TcSNP577	38	TcSNP546	39	TcSNP529	40	TcSNP522
41	TcSNP519	42	TcSNP421	43	TcSNP363	44	TcSNP329	45	TcSNP305
46	TcSNP290	47	TcSNP230	48	TcSNP194	49	TcSNP189	50	TcSNP176
51	TcSNP144	52	TcSNP143	53	TcSNP131	54	TcSNP52	55	TcSNP49
56	TcSNP33	57	TcSNP19	58	TcSNP13