SNP Profiles of NA-33   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGAGTTGGGTAAGTCCCTGGCCAACT
1._NA_33___
CC________GT________________
2._NA_33___
CC________GT____CC__GG______
3._NA_33___
CC________GT____CC__GG______
4._NA_33___
CC________GT____CC__AG______
5._NA_33___
CC________GT____CC__AG______
6._NA_33___
CC________GT____CC__AG______
7._NA_33___
CC________GT____CC__AG______
8._NA_33___
CC________GT____CC__AG______
9._NA_33___
CC________GT____CC__AG______
10._NA_33___
CC________GT____CC__AG______
11._NA_33___
CC________GT____CC__AG______
12._NA_33___
CC________GT____CC__AG______
13._NA_33___
CC________GT____CC__AG______
14._NA_33___
CC________GT____CC__AG______
15._NA_33___
CC________GT____CC__AG______
16._NA_33___
CC________GT____CC__AG______
17._NA_33___
CG________TT____CC__AG______
18._NA_33___
CC________GT____CC__AG______
19._NA_33___
CC________GT____CC__AG______
20._NA_33___
CC________GT____CC__AG______
21._NA_33___
CC________GT____CC__AG______
22._NA_33___
CC________GT____CC__AG______
23._NA_33___
CC________GT____CC__AG______
24._NA_33___
CC________GT____CC__AG______
25._NA_33___
CC________GT____CC__AG______
26._NA_33___
CC________GT____CC__AG______
27._NA_33___
CC________GT____CC__AG______
28._NA_33___
CC________GT____CC__AG______
29._NA_33___
CC______________CC__AG______
30._NA_33___
CC______________CC__AG______
31._NA_33___
GG________AC________GG______
32._NA_33___
GG__________________________
33._NA_33___
GG________AC________AG______
34._NA_33___
GG________AC________AG______
35._NA_33___
GG________AC________AG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAGGGGGCGTTTTCCTTCTAGGGTTCC
1._NA_33___
CCAG____CG____CC____AGGGTT__
2._NA_33___
__AG____CG____________GG____
3._NA_33___
__AG____CG____________GG____
4._NA_33___
__AG____GG____________GG____
5._NA_33___
__AG____GG____________GG____
6._NA_33___
__AG____GG____________GG____
7._NA_33___
__AG____GG____________GG____
8._NA_33___
__AG____GG____________GG____
9._NA_33___
__AG____GG____________GG____
10._NA_33___
__AG____GG____________GG____
11._NA_33___
__AG____GG____________GG____
12._NA_33___
__AG____GG____________GG____
13._NA_33___
__AG____GG____________GG____
14._NA_33___
__AG____GG____________GG____
15._NA_33___
__AG____GG____________GG____
16._NA_33___
__AG____GG____________GG____
17._NA_33___
__AG____CC____________GG____
18._NA_33___
CCAG__GGGGCG__CC____GGGGCT__
19._NA_33___
CCAG__GGGGCG__CC____GGGGCT__
20._NA_33___
CCAG__GGGGCG__CC____GGGGCT__
21._NA_33___
CCAG__GGGGCG__CC____GGGGCT__
22._NA_33___
CCAG__GGGGCG__CC____GGGGCT__
23._NA_33___
CCAG__GGGGCG__CC____GGGGCT__
24._NA_33___
CCAG__GGGGCG__CC____GGGGCT__
25._NA_33___
CCAG__GGGGCG__CC____GGGGCT__
26._NA_33___
CCAG__GGGGCG__CC____GGGGCT__
27._NA_33___
CCAG__GGGGCG__CC____GGGGCT__
28._NA_33___
CCAG__GGGGCG__CC____GGGGCT__
29._NA_33___
__AG____GG____________GG____
30._NA_33___
CCAG__GGGGCG__CC____GGGGCT__
31._NA_33___
__AG__GGCGCG__CC____AGCC____
32._NA_33___
________CC__________________
33._NA_33___
__AG__GGCCCG__CC____GGCC____
34._NA_33___
__AG__GGCCCG__CC____GGCC____
35._NA_33___
__AG__GGCCCG__CC____GGCC____
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGCCAACTCCAAATGGAACCCCACCCAC
1._NA_33___
________CCAA__GG__CC________
2._NA_33___
AG________AA__GG__CC________
3._NA_33___
AG________AA__GG__CC________
4._NA_33___
AG________AC__GG__CC________
5._NA_33___
AG________AC__GG__CC________
6._NA_33___
AA________AC__GG__CC________
7._NA_33___
AA________AC__GG__CC________
8._NA_33___
AA________AC__GG__CC________
9._NA_33___
AA________AC__GG__CC________
10._NA_33___
AA________AC__GG__CC________
11._NA_33___
AA________AC__GG__CC________
12._NA_33___
AA________AC__GG__CC________
13._NA_33___
AA________AC__GG__CC________
14._NA_33___
AA________AC__GG__CC________
15._NA_33___
AA________AC__GG__CC________
16._NA_33___
AA________AC__GG__CC________
17._NA_33___
AA________AA__GG__CC________
18._NA_33___
AA______CCAC__GG__CC________
19._NA_33___
AA______CCAC__GG__CC________
20._NA_33___
AA______CCAC__GG__CC________
21._NA_33___
AA______CCAC__GG__CC________
22._NA_33___
AA______CCAC__GG__CC________
23._NA_33___
AA______CCAC__GG__CC________
24._NA_33___
AA______CCAC__GG__CC________
25._NA_33___
AA______CCAC__GG__CC________
26._NA_33___
AA______CCAC__GG__CC________
27._NA_33___
AA______CCAC__GG__CC________
28._NA_33___
AA______CCAC__GG__CC________
29._NA_33___
AA________AC__GG__CC________
30._NA_33___
AA______CCAC__GG__CC________
31._NA_33___
________GGAA__GG__CC________
32._NA_33___
________CCAC__GG____________
33._NA_33___
________GGAC__GG__CC________
34._NA_33___
________GGAC__GG__CC________
35._NA_33___
________GGAC__GG__CC________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGAACTAGGGAGCCCCATGTGGCCTTCC
1._NA_33___
GG____AG______CC____________
2._NA_33___
______AG______CC____________
3._NA_33___
______AG______CC____________
4._NA_33___
______GG______AC____________
5._NA_33___
______GG______AC____________
6._NA_33___
______GG______AC____________
7._NA_33___
______GG______AC____________
8._NA_33___
______GG______AC____________
9._NA_33___
______GG______AC____________
10._NA_33___
______GG______AC____________
11._NA_33___
______GG______AC____________
12._NA_33___
______GG______AC____________
13._NA_33___
______GG______AC____________
14._NA_33___
______GG______AC____________
15._NA_33___
______GG______AC____________
16._NA_33___
______GG______AC____________
17._NA_33___
______AG______AC____________
18._NA_33___
GG____GG______AC____________
19._NA_33___
GG____GG______AC____________
20._NA_33___
GG____GG______AC____________
21._NA_33___
GG____GG______AC____________
22._NA_33___
GG____GG______AC____________
23._NA_33___
GG____GG______AC____________
24._NA_33___
GG____GG______AC____________
25._NA_33___
GG____GG______AC____________
26._NA_33___
GG____GG______AC____________
27._NA_33___
GG____GG______AC____________
28._NA_33___
GG____GG______AC____________
29._NA_33___
______GG______AC____________
30._NA_33___
GG____GG______AC____________
31._NA_33___
GG____AG______CC____________
32._NA_33___
______GG______AC____________
33._NA_33___
GG____GG______AC____________
34._NA_33___
GG____GG______AC____________
35._NA_33___
GG____GG______AC____________
 57 58 59            
_Input profile
CTATTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._NA_33___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: NA_33 RUQ_1577

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._NA_33 RUQ_1577

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._NA_33 RUQ_1577

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._NA_33

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

4._NA_33

80.8 %
13 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

5._NA_33

80.8 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

6._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

7._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016

8._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

9._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

10._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

11._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

12._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

13._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

14._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

15._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

16._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

17._NA_33

76.9 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: M6 18, 19
 Dapeng Zhang, 2016

18._NA_33 GC-01-6-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

19._NA_33 GC-01-6-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

20._NA_33 GC-01-6-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

21._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

22._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

23._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

24._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

25._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

26._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

27._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

28._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

29._NA_33

75 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

30._NA_33 GC-01-6-1-06

75 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

31._NA_33 RUQ_1577

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

32._NA_33 NA33

57.1 %
7 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._NA_33

52.9 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: FP 4
 Mars, 2018

34._NA_33 GC-01-6-1-6

52.9 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: 1 > FP5
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

35._NA_33 MITC-000715

52.9 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1404 3TcSNP1401 4TcSNP1293 5TcSNP1275
6TcSNP1253 7TcSNP1230 8TcSNP1205 9TcSNP1144 10TcSNP1112
11TcSNP1062 12TcSNP1053 13TcSNP1019 14TcSNP1010 15TcSNP999
16TcSNP998 17TcSNP945 18TcSNP899 19TcSNP872 20TcSNP836
21TcSNP835 22TcSNP823 23TcSNP800 24TcSNP739 25TcSNP731
26TcSNP723 27TcSNP702 28TcSNP660 29TcSNP645 30TcSNP644
31TcSNP642 32TcSNP640 33TcSNP602 34TcSNP591 35TcSNP589
36TcSNP577 37TcSNP546 38TcSNP529 39TcSNP522 40TcSNP519
41TcSNP421 42TcSNP363 43TcSNP329 44TcSNP305 45TcSNP290
46TcSNP230 47TcSNP194 48TcSNP189 49TcSNP176 50TcSNP144
51TcSNP143 52TcSNP131 53TcSNP52 54TcSNP49 55TcSNP33
56TcSNP19 57TcSNP13 58TcSNP1527 59TcSNP1524