SNP Profiles of PA 71 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
TTTTGGGGAAAAGTTTAAGTCCTTGGCC
1._RUQ_1564
ATTTCGGGAGTTGGTTAAGGCCCCAGCT
2._RUQ_1564
____CG________TT____________
3._RUQ_1564
____CG________AA________AG__
 1516171819202122232425262728
_Input profile
AACCCCGGGGGGGGTTTTCCTTTTGGGG
1._RUQ_1564
AACTCCAGCCGGGGTTAAAATTCTGGGG
2._RUQ_1564
____CCAG____GG____AA____GGGG
3._RUQ_1564
______AG__GGCCCG__AA____GGCC
 2930313233343536373839404142
_Input profile
TTCCAACCAACCCCAAAAGGAACCCCAA
1._RUQ_1564
CTCCAACCGGCCTTCCAACGAGACCCAC
2._RUQ_1564
CT__________TTCC__CG__AC____
3._RUQ_1564
____________AACC__CG__AC____
 4344454647484950515253545556
_Input profile
CCCCGGAACCAAGGGGCCCCAATTGGCC
1._RUQ_1564
CTAAGGAATTAGGGGGCCACATTTGGCC
2._RUQ_1564
____GG____AG______AC________
3._RUQ_1564
____GG____AG______AC________
 575859           
_Input profile
TTCCCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1564
CTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1564
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_1564
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: NA_149 RUQ_801

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._PA_71_[PER] RUQ_1564

65.3 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._PA_71_[PER] RUQ_1564

59.4 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_71_[PER] RUQ_1564

38.2 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13