SNP Profiles of MO 9   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTTTCGGGGGTTGGTTAAGGCCCTGGTT
1._MO_9
____CG________TT____CC__GG__
2._MO_9
____CG________TT____CC__GG__
3._MO_9
____CG________TT____CC__GG__
4._MO_9
____CG________TT____CC__GG__
5._MO_9
____CG________TT____CC__GG__
6._MO_9
____CG________TT____CC__GG__
7._GC-05-119-3-21
____CG________TT____CC__GG__
8._GC-05-119-3-21
____CG________TT____CC__GG__
9._GC-05-119-3-21
____CG________TT____CC__GG__
10._GC-05-071-2-22
____CG________TT____CC__GG__
11._GC-05-071-2-22
____CG________TT____CC__GG__
12._RUQ_1691
____CG________AA________GG__
13._MO_9
____CG________GT____CT__AG__
14._MO_9
____CG________GT____CT__AG__
15._MO_9
____CG________GT____CT__AG__
16._MO_9
____CG________GT____CT__AG__
17._MO_9
____CG________GT____CT__AG__
18._GC-05-071-2-22
____CG________GT____CT__AG__
19._GC-05-119-3-21
____CG________GT____CT__AG__
20._GC-05-071-2-22
____CG________GT____CT__AG__
21._GC-05-071-2-22
____CG________GT____CT__AG__
22._GC-05-071-2-22
____CG________GT____CT__AG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AATTCTAGCCGGGGTTAAAATTCTAGGG
1._MO_9
______AG____GG____________GG
2._MO_9
______AG____GG____________GG
3._MO_9
______AG____GG____________GG
4._MO_9
______AG____GG____________GG
5._MO_9
______AG____GG____________GG
6._MO_9
______AG____GG____________GG
7._GC-05-119-3-21
____CTAG__GGGGGG__AA____AGGG
8._GC-05-119-3-21
____CTAG__GGGGGG__AA____AGGG
9._GC-05-119-3-21
____CTAG__GGGGGG__AA____AGGG
10._GC-05-071-2-22
____CTAG__GGGGGG__AA____AGGG
11._GC-05-071-2-22
____CTAG____GGGG__AA____AGGG
12._RUQ_1691
______AG__GGCCCC__AA____AGCC
13._MO_9
______AG____CC____________GT
14._MO_9
______AG____CC____________GT
15._MO_9
______AG____CC____________GT
16._MO_9
______AG____CC____________GT
17._MO_9
______AG____CC____________GT
18._GC-05-071-2-22
____CCAG__AGCCCG__AC____AGGT
19._GC-05-119-3-21
____CCAG__AGCCCG__AC____AGGT
20._GC-05-071-2-22
____CCAG__AGCCCG__AC____AGGT
21._GC-05-071-2-22
____CCAG__AGCCCG__AC____AGGT
22._GC-05-071-2-22
____CCAG__AGCCCG__AC____AGGT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CTCCAACCGGCCTTCCAAGGAGCCCTAA
1._MO_9
____AA________CC__GG__CC____
2._MO_9
____AA________CC__GG__CC____
3._MO_9
____AA________CC__GG__CC____
4._MO_9
____AA________CC__GG__CC____
5._MO_9
____AA________CC__GG__CC____
6._MO_9
____AA________CC__GG__CC____
7._GC-05-119-3-21
CC__AA______TTCC__GG__CC____
8._GC-05-119-3-21
CC__AA______TTCC__GG__CC____
9._GC-05-119-3-21
CC__AA______TTCC__GG__CC____
10._GC-05-071-2-22
CC__AA______TTCC__GG__CC____
11._GC-05-071-2-22
CC__AA______TTCC__GG__CC____
12._RUQ_1691
____________AACC__GG__CC____
13._MO_9
____AA________AC__CG__AC____
14._MO_9
____AA________AC__CG__AC____
15._MO_9
____AA________AC__CG__AC____
16._MO_9
____AA________AC__CG__AC____
17._MO_9
____AA________AC__CG__AC____
18._GC-05-071-2-22
CT__AA______CCAC__CG__AC____
19._GC-05-119-3-21
CT__AA______CCAC__CG__AC____
20._GC-05-071-2-22
CT__AA______CCAC__CG__AC____
21._GC-05-071-2-22
CT__AA______CCAC__CG__AC____
22._GC-05-071-2-22
CT__AA______CCAC__CG__AC____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CTAAGGAATTAAGGGGCCACAAGTGGCC
1._MO_9
__________AA______AC________
2._MO_9
__________AA______AC________
3._MO_9
__________AA______AC________
4._MO_9
__________AA______AC________
5._MO_9
__________AA______AC________
6._MO_9
__________AA______AC________
7._GC-05-119-3-21
____GG____AA______AC________
8._GC-05-119-3-21
____GG____AA______AC________
9._GC-05-119-3-21
____GG____AA______AC________
10._GC-05-071-2-22
____GG____AA______AC________
11._GC-05-071-2-22
____GG____AA______AC________
12._RUQ_1691
____GG____AA______AC________
13._MO_9
__________AG______AA________
14._MO_9
__________AG______AA________
15._MO_9
__________AG______AA________
16._MO_9
__________AG______AA________
17._MO_9
__________AG______AA________
18._GC-05-071-2-22
____AA____AG______AA________
19._GC-05-119-3-21
____AA____AG______AA________
20._GC-05-071-2-22
____AA____AG______AA________
21._GC-05-071-2-22
____AA____AG______AA________
22._GC-05-071-2-22
____AA____AG______AA________
 57 58 59            
_Input profile
CTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._MO_9
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._MO_9
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._MO_9
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._MO_9
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._MO_9
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._MO_9
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-05-119-3-21
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-05-119-3-21
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-05-119-3-21
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-05-071-2-22
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-05-071-2-22
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RUQ_1691
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._MO_9
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._MO_9
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._MO_9
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._MO_9
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._MO_9
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-05-071-2-22
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-05-119-3-21
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-05-071-2-22
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-05-071-2-22
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-05-071-2-22
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: MO_9 RUQ_1691

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._MO_9

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016

2._MO_9

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

3._MO_9

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

4._MO_9

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

5._MO_9

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

6._MO_9

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

7._MO_9 GC-05-119-3-21

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

8._MO_9 GC-05-119-3-21

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

9._MO_9 GC-05-119-3-21

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._MO_9 GC-05-071-2-22

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._MO_9 GC-05-071-2-22

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._MO_9 RUQ_1691

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

13._MO_9

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 5
 Dapeng Zhang, 2016

14._MO_9

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016

15._MO_9

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016

16._MO_9

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 3 > FP
 Dapeng Zhang, 2016

17._MO_9

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 4 > FP
 Dapeng Zhang, 2016

18._MO_9 GC-05-071-2-22

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

19._MO_9 GC-05-119-3-21

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._MO_9 GC-05-071-2-22

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

21._MO_9 GC-05-071-2-22

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

22._MO_9 GC-05-071-2-22

52.4 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13