SNP Profiles of PA 121 [PER] View Data

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_Input profile	AT	CT	CC	GG	GG	AA	GG	TT	AA	GT	CC	CC	GG	CC
1._RUQ_1059	AT	CT	GG	GG	GG	TT	GG	TT	AA	GG	CC	CT	GG	CC
2._PA_121_[PER]	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
3._PA_121_[PER]	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
4._PA_121_[PER]	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
5._PA_121_[PER]	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
6._RUQ_1059	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
7._PA_121_[PER]	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
8._PA_121_[PER]	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
9._RUQ_1059	__	__	CC	__	__	__	__	__	__	__	__	__	__	__
10._PA_121_[PER]	__	__	GG	__	__	__	__	TT	__	__	__	__	GG	__
11._PA_121_[PER]	__	__	CG	__	__	__	__	TT	__	__	CT	__	AG	__
12._GC-05-011-1-11	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
13._GC-05-011-1-11	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
14._GC-05-011-1-11	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
15._GC-05-011-1-11	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
16._RUQ_1059	__	__	CC	__	__	__	__	AA	__	__	__	__	GG	__
17._RUQ_1059	__	__	GG	__	__	__	__	TT	__	__	__	__	__	__
18._GC-05-011-1-11	__	__	CG	__	__	__	__	TT	__	__	CT	__	AG	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CC	AG	GG	GG	CC	TT	AA	AC	TT	TT	GG	GG
1._RUQ_1059	AA	TT	CC	AG	__	GG	GG	TT	AA	AA	TT	CT	AG	GG
2._PA_121_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
3._PA_121_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
4._PA_121_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
5._PA_121_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GT
6._RUQ_1059	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
7._PA_121_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
8._PA_121_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
9._RUQ_1059	__	__	__	__	__	__	CC	__	__	__	__	__	__	__
10._PA_121_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
11._PA_121_[PER]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
12._GC-05-011-1-11	__	__	CT	AG	__	AG	GG	CG	__	CC	__	__	AG	GT
13._GC-05-011-1-11	__	__	CC	AG	__	GG	GG	CG	__	AA	__	__	AG	GG
14._GC-05-011-1-11	__	__	CC	AG	__	GG	GG	CG	__	AA	__	__	AG	GG
15._GC-05-011-1-11	__	__	CC	AG	__	GG	GG	CG	__	AA	__	__	AG	GG
16._RUQ_1059	__	__	__	AG	__	GG	CC	CG	__	AA	__	__	AG	CC
17._RUQ_1059	__	__	CC	AG	__	__	GG	__	__	AA	__	__	AG	GG
18._GC-05-011-1-11	__	__	TT	AG	__	AA	GG	CG	__	AA	__	__	AG	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	CC	AA	CC	AA	TT	CC	AA	TT	GG	AG	CC	CC	AA
1._RUQ_1059	CC	CC	AA	CC	GG	CC	TT	CC	AA	CG	AG	AA	CC	AA
2._PA_121_[PER]	__	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__
3._PA_121_[PER]	__	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__
4._PA_121_[PER]	__	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__
5._PA_121_[PER]	__	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__
6._RUQ_1059	__	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__
7._PA_121_[PER]	__	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__
8._PA_121_[PER]	__	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__
9._RUQ_1059	__	__	__	__	__	__	TT	CC	__	CG	__	__	__	__
10._PA_121_[PER]	__	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__
11._PA_121_[PER]	__	__	AA	__	__	__	__	CC	__	CC	__	CC	__	__
12._GC-05-011-1-11	TT	__	AA	__	__	__	CT	CC	__	GG	__	CC	__	__
13._GC-05-011-1-11	CC	__	AA	__	__	__	TT	CC	__	CG	__	AA	__	__
14._GC-05-011-1-11	CC	__	AA	__	__	__	TT	CC	__	CG	__	AA	__	__
15._GC-05-011-1-11	CC	__	AA	__	__	__	TT	CC	__	CG	__	AA	__	__
16._RUQ_1059	__	__	__	__	__	__	AA	CC	__	CG	__	AA	__	__
17._RUQ_1059	CC	__	__	__	__	__	TT	CC	__	CG	__	AA	__	__
18._GC-05-011-1-11	CC	__	AA	__	__	__	TT	CC	__	CC	__	CC	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	CC	AG	AA	TT	AA	GG	GG	CT	AC	AT	TT	GG	CC
1._RUQ_1059	CT	AA	GG	AA	TT	AA	GG	GG	CC	AC	AA	TT	GG	CC
2._PA_121_[PER]	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
3._PA_121_[PER]	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
4._PA_121_[PER]	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
5._PA_121_[PER]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
6._RUQ_1059	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
7._PA_121_[PER]	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
8._PA_121_[PER]	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
9._RUQ_1059	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
10._PA_121_[PER]	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
11._PA_121_[PER]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
12._GC-05-011-1-11	__	__	GG	__	__	AA	__	__	__	CC	__	__	__	__
13._GC-05-011-1-11	__	__	GG	__	__	AA	__	__	__	AC	__	__	__	__
14._GC-05-011-1-11	__	__	GG	__	__	AA	__	__	__	AC	__	__	__	__
15._GC-05-011-1-11	__	__	GG	__	__	AA	__	__	__	AC	__	__	__	__
16._RUQ_1059	__	__	GG	__	__	AA	__	__	__	AC	__	__	__	__
17._RUQ_1059	__	__	GG	__	__	AA	__	__	__	AC	__	__	__	__
18._GC-05-011-1-11	__	__	GG	__	__	AA	__	__	__	CC	__	__	__	__

	57	58	59
_Input profile	TT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1059	CT	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._PA_121_[PER]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._PA_121_[PER]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._PA_121_[PER]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._PA_121_[PER]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._RUQ_1059	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._PA_121_[PER]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._PA_121_[PER]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._RUQ_1059	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._PA_121_[PER]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._PA_121_[PER]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-05-011-1-11	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-05-011-1-11	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-05-011-1-11	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-05-011-1-11	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._RUQ_1059	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._RUQ_1059	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-05-011-1-11	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: LZ_8 RUQ_1231

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.173 IMC
0.253 Nan
0.543

1._PA_121_[PER] RUQ_1059

69 %
58 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

2._PA_121_[PER]

65.4 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

3._PA_121_[PER]

65.4 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

4._PA_121_[PER]

65.4 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

5._PA_121_[PER]

65.4 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

6._PA_121_[PER] RUQ_1059

65.4 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._PA_121_[PER]

65.4 %
13 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

8._PA_121_[PER]

65.4 %
13 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

9._PA_121_[PER] RUQ_1059

64.3 %
7 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

10._PA_121_[PER]

62.5 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

11._PA_121_[PER]

61.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 4

Dapeng Zhang, 2016

12._PA_121_[PER] GC-05-011-1-11

59.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

13._PA_121_[PER] GC-05-011-1-11

57.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

14._PA_121_[PER] GC-05-011-1-11

57.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

15._PA_121_[PER] GC-05-011-1-11

57.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

16._PA_121_[PER] RUQ_1059

52.9 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

17._PA_121_[PER] RUQ_1059

50 %
16 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._PA_121_[PER] GC-05-011-1-11

45.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13