SNP Profiles of LV 20 [POU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATTTCGGGAGTTGTGTAATTCTCTAGCT
1._RUQ_354
____CG________GT____________
2._RUQ_354
____CG________GT____CT__AG__
3._LV_20_[POU]
____CG________GT____CT__AG__
4._LV_20_[POU]
____CG________GT____CT__AG__
5._LV_20_[POU]
____CG________GT____CT__AG__
6._LV_20_[POU]
____CG________GT____CT__AG__
7._LV_20_[POU]
____CG________GT____CT__AG__
8._LV_20_[POU]
____CG________GT____CT__AG__
9._GC-04-027-2-09
____CG________GT____CT__AG__
10._GC-04-027-2-09
____CG________GT____CT__AG__
11._GC-04-027-2-09
____CG________GT____CT__AG__
12._GC-04-027-2-09
____CG________GT____CT__AG__
13._RUQ_354
____CG________AC________AG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AATTTTAGCCAGGGCTAAACTTTTAGGT
1._RUQ_354
____TTAG____GG____AC____AGGT
2._RUQ_354
______AG____GG____________GT
3._LV_20_[POU]
______AG____GG____________GT
4._LV_20_[POU]
______AG____GG____________GT
5._LV_20_[POU]
______AG____GG____________GT
6._LV_20_[POU]
______AG____GG____________GT
7._LV_20_[POU]
______AG____GG____________GT
8._LV_20_[POU]
______AG____GG____________GT
9._GC-04-027-2-09
____TTAG__AGGGGG__AC____AGGT
10._GC-04-027-2-09
____TTAG__AGGGGG__AC____AGGT
11._GC-04-027-2-09
____TTAG__AGGGGG__AC____AGGT
12._GC-04-027-2-09
____TTAG__AGGGGG__AC____AGGT
13._RUQ_354
______AG__AGCCCC__AC____AGAC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCGGGCCAACTCTCCAACGAACCCTAC
1._RUQ_354
CC__________CTCC__CG__CC____
2._RUQ_354
____GG________CC__CG__CC____
3._LV_20_[POU]
____GG________CC__CG__CC____
4._LV_20_[POU]
____GG________CC__CG__CC____
5._LV_20_[POU]
____AG________CC__CG__CC____
6._LV_20_[POU]
____AG________CC__CG__CC____
7._LV_20_[POU]
____AG________CC__CG__CC____
8._LV_20_[POU]
____AG________CC__CG__CC____
9._GC-04-027-2-09
CT__AG______CTCC__CG__CC____
10._GC-04-027-2-09
CT__AG______CTCC__CG__CC____
11._GC-04-027-2-09
CT__AG______CTCC__CG__CC____
12._GC-04-027-2-09
CT__AG______CTCC__CG__CC____
13._RUQ_354
____________AGCC__CG__CC____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTGGAACTAATTGGCCCCTTTTGGCCCC
1._RUQ_354
__GG____AA______CC__________
2._RUQ_354
________AA______CC__________
3._LV_20_[POU]
________AA______CC__________
4._LV_20_[POU]
________AA______CC__________
5._LV_20_[POU]
________AA______CC__________
6._LV_20_[POU]
________AA______CC__________
7._LV_20_[POU]
________AA______CC__________
8._LV_20_[POU]
________AA______CC__________
9._GC-04-027-2-09
__GG____AA______CC__________
10._GC-04-027-2-09
__GG____AA______CC__________
11._GC-04-027-2-09
__GG____AA______CC__________
12._GC-04-027-2-09
__GG____AA______CC__________
13._RUQ_354
__GG____AA______CC__________
 57 58             
_Input profile
CCCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_354
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_354
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._LV_20_[POU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._LV_20_[POU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._LV_20_[POU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._LV_20_[POU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._LV_20_[POU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._LV_20_[POU]
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-04-027-2-09
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-04-027-2-09
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-04-027-2-09
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-04-027-2-09
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._RUQ_354
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: LV_20_[POU] RUQ_354

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._LV_20_[POU] RUQ_354

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._LV_20_[POU] RUQ_354

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._LV_20_[POU]

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 562
 Dapeng Zhang, 2016

4._LV_20_[POU]

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 563
 Dapeng Zhang, 2016

5._LV_20_[POU]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 8 > FP
 Dapeng Zhang, 2016

6._LV_20_[POU]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 4 > FP
 Dapeng Zhang, 2016

7._LV_20_[POU]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 3
 Dapeng Zhang, 2016

8._LV_20_[POU]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 1
 Dapeng Zhang, 2016

9._LV_20_[POU] GC-04-027-2-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._LV_20_[POU] GC-04-027-2-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._LV_20_[POU] GC-04-027-2-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

12._LV_20_[POU] GC-04-027-2-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

13._LV_20_[POU] RUQ_354

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP329 45TcSNP305
46TcSNP290 47TcSNP230 48TcSNP194 49TcSNP189 50TcSNP176
51TcSNP144 52TcSNP143 53TcSNP131 54TcSNP52 55TcSNP49
56TcSNP33 57TcSNP19 58TcSNP13