SNP Profiles of NA 33   View Data

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 Key

 1234567891011121314
_Input profile
ATTTCGGGAGTTGGTTACGGCCCTAGCC
1._NA_33
____CC________GT____CC__AG__
2._NA_33
____CC________GT____CC__AG__
3._RUQ_1577
ATTTCCGGAGTTGGGTAAGTCCCTGGCC
4._RUQ_1577
____CC________GT____________
5._NA_33
____CC______________CC__AG__
6._NA_33
____CC________GT____CC__AG__
7._NA_33
____CC________GT____CC__AG__
8._NA_33
____CC________GT____CC__AG__
9._NA_33
____CC________GT____CC__AG__
10._NA_33
____CC________GT____CC__AG__
11._NA_33
____CC________GT____CC__AG__
12._NA_33
____CC________GT____CC__AG__
13._NA_33
____CC________GT____CC__AG__
14._NA_33
____CC________GT____CC__AG__
15._NA_33
____CC________GT____CC__AG__
16._NA_33
____CC________GT____CC__AG__
17._RUQ_1577
____CC________GT____CC__GG__
18._NA_33
____CG________TT____CC__AG__
19._NA_33
____CC________GT____CC__GG__
20._GC-01-6-1-06
____CC______________CC__AG__
21._GC-01-6-1-06
____CC________GT____CC__AG__
22._GC-01-6-1-06
____CC________GT____CC__AG__
23._GC-01-6-1-06
____CC________GT____CC__AG__
24._GC-01-006-1-06
____CC________GT____CC__AG__
25._GC-01-006-1-06
____CC________GT____CC__AG__
26._GC-01-006-1-06
____CC________GT____CC__AG__
27._GC-01-006-1-06
____CC________GT____CC__AG__
28._GC-01-006-1-06
____CC________GT____CC__AG__
29._GC-01-006-1-06
____CC________GT____CC__AG__
30._GC-01-006-1-06
____CC________GT____CC__AG__
31._GC-01-006-1-06
____CC________GT____CC__AG__
32._RUQ_1577
____GG________AC________GG__
33._NA_33
____GG________AC________AG__
34._GC-01-6-1-6
____GG________AC________AG__
35._MITC-000715
____GG________AC________AG__
36._NA33
____GG______________________
 1516171819202122232425262728
_Input profile
AATTCCAACGGGGGCTAACCCCCCAGGG
1._NA_33
______AG____GG____________GG
2._NA_33
______AG____GG____________GG
3._RUQ_1577
AACTCCAGGGGGCGTTTTCCTTCTAGGG
4._RUQ_1577
____CCAG____CG____CC____AGGG
5._NA_33
______AG____GG____________GG
6._NA_33
______AG____GG____________GG
7._NA_33
______AG____GG____________GG
8._NA_33
______AG____GG____________GG
9._NA_33
______AG____GG____________GG
10._NA_33
______AG____GG____________GG
11._NA_33
______AG____GG____________GG
12._NA_33
______AG____GG____________GG
13._NA_33
______AG____GG____________GG
14._NA_33
______AG____GG____________GG
15._NA_33
______AG____GG____________GG
16._NA_33
______AG____GG____________GG
17._RUQ_1577
______AG____CG____________GG
18._NA_33
______AG____CC____________GG
19._NA_33
______AG____CG____________GG
20._GC-01-6-1-06
____CCAG__GGGGCG__CC____GGGG
21._GC-01-6-1-06
____CCAG__GGGGCG__CC____GGGG
22._GC-01-6-1-06
____CCAG__GGGGCG__CC____GGGG
23._GC-01-6-1-06
____CCAG__GGGGCG__CC____GGGG
24._GC-01-006-1-06
____CCAG__GGGGCG__CC____GGGG
25._GC-01-006-1-06
____CCAG__GGGGCG__CC____GGGG
26._GC-01-006-1-06
____CCAG__GGGGCG__CC____GGGG
27._GC-01-006-1-06
____CCAG__GGGGCG__CC____GGGG
28._GC-01-006-1-06
____CCAG__GGGGCG__CC____GGGG
29._GC-01-006-1-06
____CCAG__GGGGCG__CC____GGGG
30._GC-01-006-1-06
____CCAG__GGGGCG__CC____GGGG
31._GC-01-006-1-06
____CCAG__GGGGCG__CC____GGGG
32._RUQ_1577
______AG__GGCGCG__CC____AGCC
33._NA_33
______AG__GGCCCG__CC____GGCC
34._GC-01-6-1-6
______AG__GGCCCG__CC____GGCC
35._MITC-000715
______AG__GGCCCG__CC____GGCC
36._NA33
____________CC______________
 2930313233343536373839404142
_Input profile
TTCCAGCCAATTTTCCAAGGAACCCCAA
1._NA_33
____AG________AC__GG__CC____
2._NA_33
____AG________AC__GG__CC____
3._RUQ_1577
TTCCAGCCAACTCCAAATGGAACCCCAC
4._RUQ_1577
TT__________CCAA__GG__CC____
5._NA_33
____AA________AC__GG__CC____
6._NA_33
____AA________AC__GG__CC____
7._NA_33
____AA________AC__GG__CC____
8._NA_33
____AA________AC__GG__CC____
9._NA_33
____AA________AC__GG__CC____
10._NA_33
____AA________AC__GG__CC____
11._NA_33
____AA________AC__GG__CC____
12._NA_33
____AA________AC__GG__CC____
13._NA_33
____AA________AC__GG__CC____
14._NA_33
____AA________AC__GG__CC____
15._NA_33
____AA________AC__GG__CC____
16._NA_33
____AA________AC__GG__CC____
17._RUQ_1577
____AG________AA__GG__CC____
18._NA_33
____AA________AA__GG__CC____
19._NA_33
____AG________AA__GG__CC____
20._GC-01-6-1-06
CT__AA______CCAC__GG__CC____
21._GC-01-6-1-06
CT__AA______CCAC__GG__CC____
22._GC-01-6-1-06
CT__AA______CCAC__GG__CC____
23._GC-01-6-1-06
CT__AA______CCAC__GG__CC____
24._GC-01-006-1-06
CT__AA______CCAC__GG__CC____
25._GC-01-006-1-06
CT__AA______CCAC__GG__CC____
26._GC-01-006-1-06
CT__AA______CCAC__GG__CC____
27._GC-01-006-1-06
CT__AA______CCAC__GG__CC____
28._GC-01-006-1-06
CT__AA______CCAC__GG__CC____
29._GC-01-006-1-06
CT__AA______CCAC__GG__CC____
30._GC-01-006-1-06
CT__AA______CCAC__GG__CC____
31._GC-01-006-1-06
CT__AA______CCAC__GG__CC____
32._RUQ_1577
____________GGAA__GG__CC____
33._NA_33
____________GGAC__GG__CC____
34._GC-01-6-1-6
____________GGAC__GG__CC____
35._MITC-000715
____________GGAC__GG__CC____
36._NA33
____________CCAC__GG________
 4344454647484950515253545556
_Input profile
CTCCGGAACTAAGTAATTCCAAGTGGCC
1._NA_33
__________GG______AC________
2._NA_33
__________GG______AC________
3._RUQ_1577
CCACGGAACTAGGGAGCCCCATGTGGCC
4._RUQ_1577
____GG____AG______CC________
5._NA_33
__________GG______AC________
6._NA_33
__________GG______AC________
7._NA_33
__________GG______AC________
8._NA_33
__________GG______AC________
9._NA_33
__________GG______AC________
10._NA_33
__________GG______AC________
11._NA_33
__________GG______AC________
12._NA_33
__________GG______AC________
13._NA_33
__________GG______AC________
14._NA_33
__________GG______AC________
15._NA_33
__________GG______AC________
16._NA_33
__________GG______AC________
17._RUQ_1577
__________AG______CC________
18._NA_33
__________AG______AC________
19._NA_33
__________AG______CC________
20._GC-01-6-1-06
____GG____GG______AC________
21._GC-01-6-1-06
____GG____GG______AC________
22._GC-01-6-1-06
____GG____GG______AC________
23._GC-01-6-1-06
____GG____GG______AC________
24._GC-01-006-1-06
____GG____GG______AC________
25._GC-01-006-1-06
____GG____GG______AC________
26._GC-01-006-1-06
____GG____GG______AC________
27._GC-01-006-1-06
____GG____GG______AC________
28._GC-01-006-1-06
____GG____GG______AC________
29._GC-01-006-1-06
____GG____GG______AC________
30._GC-01-006-1-06
____GG____GG______AC________
31._GC-01-006-1-06
____GG____GG______AC________
32._RUQ_1577
____GG____AG______CC________
33._NA_33
____GG____GG______AC________
34._GC-01-6-1-6
____GG____GG______AC________
35._MITC-000715
____GG____GG______AC________
36._NA33
__________GG______AC________
 575859           
_Input profile
CTACCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_1577
TTCCCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RUQ_1577
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._RUQ_1577
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-01-6-1-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-01-6-1-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-01-6-1-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-01-6-1-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-006-1-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-01-006-1-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-006-1-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-01-006-1-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-01-006-1-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-01-006-1-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-01-006-1-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-01-006-1-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._RUQ_1577
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._NA_33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._GC-01-6-1-6
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._MITC-000715
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
36._NA33
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: LP_1_/41_[POU] RUQ_353

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._NA_33

73.1 %
13 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

2._NA_33

73.1 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

3._NA_33 RUQ_1577

72.9 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._NA_33 RUQ_1577

71.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._NA_33

70.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

6._NA_33

69.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

7._NA_33

69.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._NA_33

69.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

9._NA_33

69.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

10._NA_33

69.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

11._NA_33

69.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

12._NA_33

69.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

13._NA_33

69.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

14._NA_33

69.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

15._NA_33

69.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

16._NA_33

69.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

17._NA_33 RUQ_1577

69.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._NA_33

69.2 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: M6 18, 19
 Dapeng Zhang, 2016

19._NA_33

69.2 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

20._NA_33 GC-01-6-1-06

67.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

21._NA_33 GC-01-6-1-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

22._NA_33 GC-01-6-1-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

23._NA_33 GC-01-6-1-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

24._NA_33 GC-01-006-1-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

25._NA_33 GC-01-006-1-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

26._NA_33 GC-01-006-1-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

27._NA_33 GC-01-006-1-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

28._NA_33 GC-01-006-1-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

29._NA_33 GC-01-006-1-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

30._NA_33 GC-01-006-1-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

31._NA_33 GC-01-006-1-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

32._NA_33 RUQ_1577

55.9 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

33._NA_33

50 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: FP 4
 Mars, 2018

34._NA_33 GC-01-6-1-6

50 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: 1 > FP5
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

35._NA_33 MITC-000715

50 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

36._NA_33 NA33

35.7 %
7 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13