SNP Profiles of NA 26   View Data

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 Key

 1234567891011121314
_Input profile
ATTTGGGGAGATGTTTAAGTCTTTAACT
1._RUQ_1230
AATTCGGGAGATGGTTAAGGCCTTAGCC
2._NA_26
____CG________TT____CC__AG__
3._NA_26
____CG________TT____CC__AG__
4._NA_26
____CG________TT____CC__AG__
5._NA_26
____CG________TT____CC__AG__
6._NA_26
____CG________TT____CC__AG__
7._RUQ_1230
____CG________TT____CC__AG__
8._NA_26
____CG________GT____CC__GG__
9._RUQ_1230
____CG______________________
10._RUQ_1230
____CG________TT____________
11._GC-04-021-2-03
____CG________TT____CC__AG__
12._GC-04-021-2-03
____CG________TT____CC__AG__
13._GC-04-021-2-03
____CG________TT____CC__AG__
14._GC-04-021-2-03
____CG________TT____CC__AG__
15._GC-04-021-2-03
____CG________TT____CC__AG__
16._RUQ_1230
____CG________AA________AG__
17._MITC-000034
____CG________AA________AG__
 1516171819202122232425262728
_Input profile
AACTCTGGCGAGCGTTAAACTTTTAGGT
1._RUQ_1230
AATTCCAGCCGGCCTTATCCTTTTGGGG
2._NA_26
______AG____CC____________GG
3._NA_26
______AG____CC____________GG
4._NA_26
______AG____CC____________GG
5._NA_26
______AG____CC____________GG
6._NA_26
______AG____CC____________GG
7._RUQ_1230
______AG____CC____________GG
8._NA_26
______AA____CC____________GG
9._RUQ_1230
____________GG______________
10._RUQ_1230
____CCAG____CC____CC____GGGG
11._GC-04-021-2-03
____CCAG__GGCCGG__CC____GGGG
12._GC-04-021-2-03
____CCAG__GGCCGG__CC____GGGG
13._GC-04-021-2-03
____CCAG__GGCCGG__CC____GGGG
14._GC-04-021-2-03
____CCAG__GGCCGG__CC____GGGG
15._GC-04-021-2-03
____CCAG__GGCCGG__CC____GGGG
16._RUQ_1230
______AG__GGGGCC__CC____GGCC
17._MITC-000034
______AG__GGGGCC__CC____GGCC
 2930313233343536373839404142
_Input profile
CTGGAACGAACTCTCCATCGAGACCCAA
1._RUQ_1230
TTCCAACCAGTTCCACATGGAACCCCAC
2._NA_26
____AA________AC__GG__CC____
3._NA_26
____AA________AC__GG__CC____
4._NA_26
____AA________AC__GG__CC____
5._NA_26
____AA________AC__GG__CC____
6._NA_26
____AA________AC__GG__CC____
7._RUQ_1230
____AA________AC__GG__CC____
8._NA_26
____AA________AC__GG__AC____
9._RUQ_1230
____________CCAC__GG________
10._RUQ_1230
TT__________CCAC__GG__CC____
11._GC-04-021-2-03
CC__AA______CCAC__GG__CC____
12._GC-04-021-2-03
CC__AA______CCAC__GG__CC____
13._GC-04-021-2-03
CC__AA______CCAC__GG__CC____
14._GC-04-021-2-03
CC__AA______CCAC__GG__CC____
15._GC-04-021-2-03
CC__AA______CCAC__GG__CC____
16._RUQ_1230
____________GGAC__GG__CC____
17._MITC-000034
____________GGAC__GG__CC____
 4344454647484950515253545556
_Input profile
CCACAGCCTTAGTTAGCTCCTTGTGGAC
1._RUQ_1230
CCAAGGACCTAGGGAG__ACTTGGGGCC
2._NA_26
__________AG______AC________
3._NA_26
__________AG______AC________
4._NA_26
__________AG______AC________
5._NA_26
__________AG______AC________
6._NA_26
__________AG______AC________
7._RUQ_1230
__________AG______AC________
8._NA_26
__________AG______CC________
9._RUQ_1230
__________AG______AC________
10._RUQ_1230
____GG____AG______AC________
11._GC-04-021-2-03
____GG____AG______AC________
12._GC-04-021-2-03
____GG____AG______AC________
13._GC-04-021-2-03
____GG____AG______AC________
14._GC-04-021-2-03
____GG____AG______AC________
15._GC-04-021-2-03
____GG____AG______AC________
16._RUQ_1230
____GG____AG______AC________
17._MITC-000034
____GG____AG______AC________
 575859           
_Input profile
CTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1230
TTCCCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._NA_26
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._NA_26
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._NA_26
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._NA_26
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._NA_26
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._RUQ_1230
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._NA_26
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._RUQ_1230
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._RUQ_1230
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-04-021-2-03
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-04-021-2-03
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-04-021-2-03
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-04-021-2-03
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-04-021-2-03
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._RUQ_1230
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._MITC-000034
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: LCT_EEN_68_/S-2 RUQ_1594

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._NA_26 RUQ_1230

64.7 %
58 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._NA_26

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 8 > FP
 Dapeng Zhang, 2016

3._NA_26

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 7 > FP
 Dapeng Zhang, 2016

4._NA_26

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 6 > FP
 Dapeng Zhang, 2016

5._NA_26

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 4 > FP
 Dapeng Zhang, 2016

6._NA_26

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._NA_26 RUQ_1230

61.5 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._NA_26

57.7 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E352 T5
 Dapeng Zhang, 2016

9._NA_26 RUQ_1230

57.1 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

10._NA_26 RUQ_1230

56.3 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._NA_26 GC-04-021-2-03

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

12._NA_26 GC-04-021-2-03

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

13._NA_26 GC-04-021-2-03

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018

14._NA_26 GC-04-021-2-03

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

15._NA_26 GC-04-021-2-03

54.8 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._NA_26 RUQ_1230

41.2 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

17._NA_26 MITC-000034

41.2 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13