SNP Profiles of LV 20 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CG	AA	CC	AG	TT	CC	AC	AA	GG	AA	AC	CC	CC	CC
1._RUQ_354	CG	GG	CC	AA	CT	CT	CC	AA	CG	AA	CC	CT	TT	__
2._RUQ_354	__	__	__	__	__	AG	CC	__	CG	__	CC	__	__	__
3._RUQ_354	__	__	__	__	__	CT	CC	__	CG	__	CC	__	__	__
4._LV_20_[POU]	__	AG	__	__	__	__	CC	__	CG	__	CC	__	__	__
5._LV_20_[POU]	__	AG	__	__	__	__	CC	__	CG	__	CC	__	__	__
6._LV_20_[POU]	__	AG	__	__	__	__	CC	__	CG	__	CC	__	__	__
7._LV_20_[POU]	__	AG	__	__	__	__	CC	__	CG	__	CC	__	__	__
8._GC-04-027-2-09	__	AG	__	__	__	CT	CC	__	CG	__	CC	__	__	__
9._GC-04-027-2-09	__	AG	__	__	__	CT	CC	__	CG	__	CC	__	__	__
10._GC-04-027-2-09	__	AG	__	__	__	CT	CC	__	CG	__	CC	__	__	__
11._GC-04-027-2-09	__	AG	__	__	__	CT	CC	__	CG	__	CC	__	__	__
12._RUQ_354	__	GG	__	__	__	__	CC	__	CG	__	CC	__	__	__
13._LV_20_[POU]	__	GG	__	__	__	__	CC	__	CG	__	CC	__	__	__
14._LV_20_[POU]	__	GG	__	__	__	__	CC	__	CG	__	CC	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AC	TT	AG	GG	GG	CC	CC	AT	GT	GG	CC	TT	CC
1._RUQ_354	GG	AA	CT	AA	TT	GG	CC	CC	TT	TT	GG	CC	CC	CC
2._RUQ_354	GG	__	__	AA	__	__	__	CC	__	__	__	__	__	__
3._RUQ_354	GG	__	__	AA	__	__	__	CC	__	__	__	__	__	__
4._LV_20_[POU]	__	__	__	AA	__	__	__	CC	__	__	__	__	__	__
5._LV_20_[POU]	__	__	__	AA	__	__	__	CC	__	__	__	__	__	__
6._LV_20_[POU]	__	__	__	AA	__	__	__	CC	__	__	__	__	__	__
7._LV_20_[POU]	__	__	__	AA	__	__	__	CC	__	__	__	__	__	__
8._GC-04-027-2-09	GG	__	__	AA	__	__	__	CC	__	__	__	__	__	__
9._GC-04-027-2-09	GG	__	__	AA	__	__	__	CC	__	__	__	__	__	__
10._GC-04-027-2-09	GG	__	__	AA	__	__	__	CC	__	__	__	__	__	__
11._GC-04-027-2-09	GG	__	__	AA	__	__	__	CC	__	__	__	__	__	__
12._RUQ_354	__	__	__	AA	__	__	__	CC	__	__	__	__	__	__
13._LV_20_[POU]	__	__	__	AA	__	__	__	CC	__	__	__	__	__	__
14._LV_20_[POU]	__	__	__	AA	__	__	__	CC	__	__	__	__	__	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CT	AA	TT	CG	AG	AT	GG	GT	AA	GT	CC	CT	CC	AA
1._RUQ_354	CT	AT	TT	CG	GG	TT	GT	GT	AA	TT	CT	CT	CT	AA
2._RUQ_354	__	__	__	CG	__	__	__	AC	__	__	__	__	__	__
3._RUQ_354	__	__	__	CG	__	__	__	GT	__	__	__	__	__	__
4._LV_20_[POU]	__	__	__	CG	__	__	__	GT	__	__	CT	__	__	__
5._LV_20_[POU]	__	__	__	CG	__	__	__	GT	__	__	CT	__	__	__
6._LV_20_[POU]	__	__	__	CG	__	__	__	GT	__	__	CT	__	__	__
7._LV_20_[POU]	__	__	__	CG	__	__	__	GT	__	__	CT	__	__	__
8._GC-04-027-2-09	__	__	__	CG	__	__	__	GT	__	__	CT	__	__	__
9._GC-04-027-2-09	__	__	__	CG	__	__	__	GT	__	__	CT	__	__	__
10._GC-04-027-2-09	__	__	__	CG	__	__	__	GT	__	__	CT	__	__	__
11._GC-04-027-2-09	__	__	__	CG	__	__	__	GT	__	__	CT	__	__	__
12._RUQ_354	__	__	__	CG	__	__	__	GT	__	__	CT	__	__	__
13._LV_20_[POU]	__	__	__	CG	__	__	__	GT	__	__	CT	__	__	__
14._LV_20_[POU]	__	__	__	CG	__	__	__	GT	__	__	CT	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	CC	AA	CG	GG	CC	CT	AT	AC	TT	TT	AG	GG	TT
1._RUQ_354	TT	TT	AG	CC	AG	GG	CT	AA	AC	TT	TT	AG	GT	CC
2._RUQ_354	__	__	AG	__	AG	CC	CC	__	AC	__	__	AG	AC	__
3._RUQ_354	__	TT	AG	__	__	GG	__	__	AC	__	__	AG	GT	CC
4._LV_20_[POU]	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
5._LV_20_[POU]	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
6._LV_20_[POU]	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
7._LV_20_[POU]	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
8._GC-04-027-2-09	__	TT	AG	__	AG	GG	GG	__	AC	__	__	AG	GT	CT
9._GC-04-027-2-09	__	TT	AG	__	AG	GG	GG	__	AC	__	__	AG	GT	CT
10._GC-04-027-2-09	__	TT	AG	__	AG	GG	GG	__	AC	__	__	AG	GT	CT
11._GC-04-027-2-09	__	TT	AG	__	AG	GG	GG	__	AC	__	__	AG	GT	CT
12._RUQ_354	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
13._LV_20_[POU]	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
14._LV_20_[POU]	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__

Input profile: IMC_57 RUQ_1055

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

IMC
0.697 LCT
0.068 Nac
0.178

1._LV_20_[POU] RUQ_354

64.5 %
55 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.555 Nac
0.421

2._LV_20_[POU] RUQ_354

59.4 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

3._LV_20_[POU] RUQ_354

59.4 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._LV_20_[POU]

58.3 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 8 > FP

Dapeng Zhang, 2016

5._LV_20_[POU]

58.3 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 4 > FP

Dapeng Zhang, 2016

6._LV_20_[POU]

58.3 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 3

Dapeng Zhang, 2016

7._LV_20_[POU]

58.3 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 1

Dapeng Zhang, 2016

8._LV_20_[POU] GC-04-027-2-09

57.5 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._LV_20_[POU] GC-04-027-2-09

57.5 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

10._LV_20_[POU] GC-04-027-2-09

57.5 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

11._LV_20_[POU] GC-04-027-2-09

57.5 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

12._LV_20_[POU] RUQ_354

54.2 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

13._LV_20_[POU]

54.2 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 562

Dapeng Zhang, 2016

14._LV_20_[POU]

54.2 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 563

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP660	2	TcSNP645	3	TcSNP644	4	TcSNP642	5	TcSNP640
6	TcSNP602	7	TcSNP591	8	TcSNP589	9	TcSNP577	10	TcSNP546
11	TcSNP529	12	TcSNP522	13	TcSNP421	14	TcSNP363	15	TcSNP329
16	TcSNP305	17	TcSNP290	18	TcSNP230	19	TcSNP194	20	TcSNP189
21	TcSNP176	22	TcSNP144	23	TcSNP143	24	TcSNP131	25	TcSNP52
26	TcSNP49	27	TcSNP33	28	TcSNP19	29	TcSNP13	30	TcSNP1527
31	TcSNP1524	32	TcSNP1458	33	TcSNP1404	34	TcSNP1293	35	TcSNP1275
36	TcSNP1253	37	TcSNP1230	38	TcSNP1205	39	TcSNP1144	40	TcSNP1112
41	TcSNP1053	42	TcSNP1019	43	TcSNP1010	44	TcSNP999	45	TcSNP998
46	TcSNP945	47	TcSNP899	48	TcSNP872	49	TcSNP836	50	TcSNP835
51	TcSNP823	52	TcSNP800	53	TcSNP739	54	TcSNP731	55	TcSNP723
56	TcSNP702