SNP Profiles of B 12/1 [POU]   View Data

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 Key

 1234567891011121314
_Input profile
ATTTCCGGAGATGTTTAATTCCTTGGCC
1._RUQ_1541
____CG________GT____________
2._RUQ_1541
__TTCGGGAATTGGGTAAGGCCCTAGCT
3._B_12_/1_[POU]
____CG________GT____CC__AG__
4._B_12_/1_[POU]
____CG________GT____CC__AG__
5._B_12_/1_[POU]
____CG________GT____CC__AG__
6._B_12_/1_[POU]
____CG________GT____CC__AG__
7._B_12_/1_[POU]
____CG________GT____CC__AG__
8._RUQ_1541
____CG________GT____CC__AG__
9._B_12_/1_[POU]
____CG________GT____CC__AG__
10._GC-05-093-2-44
____CG________GT____CC__AG__
11._GC-05-093-2-44
____CG________GT____CC__AG__
12._GC-05-093-2-44
____CG________GT____CC__AG__
13._GC-05-093-2-44
____CG________GT____CC__AG__
14._GC-05-093-2-44
____CG________GT____CC__AG__
15._RUQ_1541
____CG________AC________AG__
 1516171819202122232425262728
_Input profile
AACCCCAACGGGGGCTATCCTTCTAAGT
1._RUQ_1541
____CCAG____GG____CC____AGGT
2._RUQ_1541
AATTCTAGCGAGGGCTAACCTTCTAGGT
3._B_12_/1_[POU]
______AG____GG____________GT
4._B_12_/1_[POU]
______AG____GG____________GT
5._B_12_/1_[POU]
______AG____GG____________GT
6._B_12_/1_[POU]
______AG____GG____________GT
7._B_12_/1_[POU]
______AG____GG____________GT
8._RUQ_1541
______AG____GG____________GT
9._B_12_/1_[POU]
______AG____GG____________GT
10._GC-05-093-2-44
____CTAG__AGGGCG__CC____AGGT
11._GC-05-093-2-44
____CTAG__AGGGCG__CC____AGGT
12._GC-05-093-2-44
____CTAG__AGGGCG__CC____AGGT
13._GC-05-093-2-44
____CTAG__AGGGCG__CC____AGGT
14._GC-05-093-2-44
____CTAG__AGGGCG__CC____AGGT
15._RUQ_1541
______AG__AGCCCG__CC____AGAC
 2930313233343536373839404142
_Input profile
TTGGAGCCGGTTCCAATTGGAACCCCAA
1._RUQ_1541
TT__________CTCC__GG__CC____
2._RUQ_1541
TTCGAACCAATTCTCCAAGGAGCCCTAC
3._B_12_/1_[POU]
____AA________CC__GG__CC____
4._B_12_/1_[POU]
____AA________CC__GG__CC____
5._B_12_/1_[POU]
____AA________CC__GG__CC____
6._B_12_/1_[POU]
____AA________CC__GG__CC____
7._B_12_/1_[POU]
____AA________CC__GG__CC____
8._RUQ_1541
____AA________CC__GG__CC____
9._B_12_/1_[POU]
____AA________CC__GG__CC____
10._GC-05-093-2-44
TT__AA______CTCC__GG__CC____
11._GC-05-093-2-44
TT__AA______CTCC__GG__CC____
12._GC-05-093-2-44
TT__AA______CTCC__GG__CC____
13._GC-05-093-2-44
TT__AA______CTCC__GG__CC____
14._GC-05-093-2-44
TT__AA______CTCC__GG__CC____
15._RUQ_1541
____________AGCC__GG__CC____
 4344454647484950515253545556
_Input profile
CTAAGGAACTAATTAGCTAAATTTGGCC
1._RUQ_1541
____GG____AA______CC________
2._RUQ_1541
CCACGGAACTAATTAGTTCCATTTGGCC
3._B_12_/1_[POU]
__________AA______CC________
4._B_12_/1_[POU]
__________AA______CC________
5._B_12_/1_[POU]
__________AA______CC________
6._B_12_/1_[POU]
__________AA______CC________
7._B_12_/1_[POU]
__________AA______CC________
8._RUQ_1541
__________AA______CC________
9._B_12_/1_[POU]
__________AA______CC________
10._GC-05-093-2-44
____GG____AA______CC________
11._GC-05-093-2-44
____GG____AA______CC________
12._GC-05-093-2-44
____GG____AA______CC________
13._GC-05-093-2-44
____GG____AA______CC________
14._GC-05-093-2-44
____GG____AA______CC________
15._RUQ_1541
____GG____AA______CC________
 575859           
_Input profile
TTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1541
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1541
TTACCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._B_12_/1_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._B_12_/1_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._B_12_/1_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._B_12_/1_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._B_12_/1_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._RUQ_1541
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._B_12_/1_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-05-093-2-44
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-05-093-2-44
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-05-093-2-44
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-05-093-2-44
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-05-093-2-44
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._RUQ_1541
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: AMAZ_6_/3 RUQ_1596

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._B_12_/1_[POU] RUQ_1541

71.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._B_12_/1_[POU] RUQ_1541

69 %
58 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._B_12_/1_[POU]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 1 > FP
 Dapeng Zhang, 2016

4._B_12_/1_[POU]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 5
 Dapeng Zhang, 2016

5._B_12_/1_[POU]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 4
 Dapeng Zhang, 2016

6._B_12_/1_[POU]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 3
 Dapeng Zhang, 2016

7._B_12_/1_[POU]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._B_12_/1_[POU] RUQ_1541

65.4 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._B_12_/1_[POU]

65.4 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F461 T10
 Dapeng Zhang, 2016

10._B_12_/1_[POU] GC-05-093-2-44

64.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._B_12_/1_[POU] GC-05-093-2-44

64.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._B_12_/1_[POU] GC-05-093-2-44

64.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._B_12_/1_[POU] GC-05-093-2-44

64.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._B_12_/1_[POU] GC-05-093-2-44

64.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._B_12_/1_[POU] RUQ_1541

44.1 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13