SNP Profiles of AMAZ 3 /2   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTTTCCGGAGATGGTTAAGTCCAACCGG
1._RUQ_91
TTTTCCGGAG__GGTTAAGTCCAACCGG
2._AMAZ_3_/2
____CC________TT__________GG
3._AMAZ_3_/2
____CC________TT__________GG
4._AMAZ_3_/2
____CC________TT__________GG
5._AMAZ_3_/2
____CC________TT__________GG
6._AMAZ_3_/2
____CC________TT__________GG
7._AMAZ_3_/2
____CC________TT__________GG
8._AMAZ_3_/2
____CC________TT__________GG
9._AMAZ_3_/2
____CC________TT__________GG
10._AMAZ_3_/2
____CC________TT__________GG
11._AMAZ_3_/2
____CC________TT__________GG
12._RUQ_91
____CC________TT____________
13._RUQ_91
____CC________TT__________GG
14._AMAZ_3_/2
____CC________TT__________GG
15._GC-03-022-2-11
____CC________TT__________GG
16._GC-03-022-2-11
____CC________TT__________GG
17._GC-03-022-2-11
____CC________TT__________GG
18._GC-03-022-2-11
____CC________TT__________GG
19._GC-03-022-2-11
____CC________TT__________GG
20._GC-03-022-2-11
____CC________TT__________GG
21._GC-03-022-2-11
____CC________TT__________GG
22._GC-03-022-2-11
____CC________TT__________GG
23._GC-03-022-2-11
____CC________TT__________GG
24._GC-03-022-2-11
____CC________TT__________GG
25._RUQ_91
____GG________AA__________GG
26._AMAZ_3_/2
____CC________GT__________AG
27._AMAZ_3_/2
____CC________GT__________AG
28._AMAZ_3_/2
____CC________GT__________AG
29._AMAZ_3_/2
____CC________GT__________AG
30._GC-03-022-2-11
____CC________GT__________AG
31._GC-03-022-2-11
____CC________GT__________AG
32._GC-03-022-2-11
____CC________GT__________AG
33._GC-03-022-2-11
____CC________GT__________AG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCCCCCAACCGGCGTTAAAATTCCAAGT
1._RUQ_91
CCCCCCAACCGGCGTTAAAATTCCAAGT
2._AMAZ_3_/2
__CC__AA____CG____________GT
3._AMAZ_3_/2
__CC__AA____CG____________GT
4._AMAZ_3_/2
__CC__AA____CG____________GT
5._AMAZ_3_/2
__CC__AA____CG____________GT
6._AMAZ_3_/2
__CC__AA____CG____________GT
7._AMAZ_3_/2
__CC__AA____CG____________GT
8._AMAZ_3_/2
__CC__AA____CG____________GT
9._AMAZ_3_/2
__CC__AA____CG____________GT
10._AMAZ_3_/2
__CC__AA____CG____________GT
11._AMAZ_3_/2
__CC__AA____CG____________GT
12._RUQ_91
______AA__________________GT
13._RUQ_91
__CC__AA____CG____________GT
14._AMAZ_3_/2
__CC__AA____CG____________GT
15._GC-03-022-2-11
__CCCCAA__GGCGCG__AA____AAGT
16._GC-03-022-2-11
__CCCCAA__GGCGCG__AA____AAGT
17._GC-03-022-2-11
__CCCCAA__GGCGCG__AA____AAGT
18._GC-03-022-2-11
__CCCCAA__GGCGCG__AA____AAGT
19._GC-03-022-2-11
__CCCCAA__GGCGCG__AA____AAGT
20._GC-03-022-2-11
__CCCCAA__GGCGCG__AA____AAGT
21._GC-03-022-2-11
__CCCCAA__GGCGCG__AA____AAGT
22._GC-03-022-2-11
__CCCCAA__GGCGCG__AA____AAGT
23._GC-03-022-2-11
__CCCCAA__GGCGCG__AA____AAGT
24._GC-03-022-2-11
__CCCCAA__GGCGCG__AA____AAGT
25._RUQ_91
______AA__GGCGCG__AA____AAAC
26._AMAZ_3_/2
__CC__AG____GG____________GG
27._AMAZ_3_/2
__CC__AG____GG____________GG
28._AMAZ_3_/2
__CC__AG____GG____________GG
29._AMAZ_3_/2
__CC__AG____GG____________GG
30._GC-03-022-2-11
__CCCCAG__GGGGCG__CC____GGGG
31._GC-03-022-2-11
__CCCCAG__GGGGCG__CC____GGGG
32._GC-03-022-2-11
__CCCCAG__GGGGCG__CC____GGGG
33._GC-03-022-2-11
__CCCCAG__GGGGCG__CC____GGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTCGCCAATTTTAAATAACCCCAACTAA
1._RUQ_91
TTCGCCAATTTTAAATAACCCCAACTAA
2._AMAZ_3_/2
____________AA____CC________
3._AMAZ_3_/2
____________AA____CC________
4._AMAZ_3_/2
____________AA____CC________
5._AMAZ_3_/2
____________AA____CC________
6._AMAZ_3_/2
____________AA____CC________
7._AMAZ_3_/2
____________AA____CC________
8._AMAZ_3_/2
____________AA____CC________
9._AMAZ_3_/2
____________AA____CC________
10._AMAZ_3_/2
____________AA____CC________
11._AMAZ_3_/2
____________AA____CC________
12._RUQ_91
TT________TTAA____CC________
13._RUQ_91
____________AA____CC________
14._AMAZ_3_/2
____________AA____CC________
15._GC-03-022-2-11
TT________TTAA____CC________
16._GC-03-022-2-11
TT________TTAA____CC________
17._GC-03-022-2-11
TT________TTAA____CC________
18._GC-03-022-2-11
TT________TTAA____CC________
19._GC-03-022-2-11
TT________TTAA____CC________
20._GC-03-022-2-11
TT________TTAA____CC________
21._GC-03-022-2-11
TT________TTAA____CC________
22._GC-03-022-2-11
TT________TTAA____CC________
23._GC-03-022-2-11
TT________TTAA____CC________
24._GC-03-022-2-11
TT________TTAA____CC________
25._RUQ_91
__________AAAA____CC________
26._AMAZ_3_/2
____________AC____CC________
27._AMAZ_3_/2
____________AC____CC________
28._AMAZ_3_/2
____________AC____CC________
29._AMAZ_3_/2
____________AC____CC________
30._GC-03-022-2-11
CT________CCAC____CC________
31._GC-03-022-2-11
CT________CCAC____CC________
32._GC-03-022-2-11
CT________CCAC____CC________
33._GC-03-022-2-11
CT________CCAC____CC________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGAATTAATTAGTTAAAATTGGCCTTAC
1._RUQ_91
GGAATTAATTAGTTAAAATTGGCCTTAC
2._AMAZ_3_/2
______AA______AA____________
3._AMAZ_3_/2
______AA______AA____________
4._AMAZ_3_/2
______AA______AA____________
5._AMAZ_3_/2
______AA______AA____________
6._AMAZ_3_/2
______AA______AA____________
7._AMAZ_3_/2
______AA______AA____________
8._AMAZ_3_/2
______AA______AA____________
9._AMAZ_3_/2
______AA______AA____________
10._AMAZ_3_/2
______AA______AA____________
11._AMAZ_3_/2
______AA______AA____________
12._RUQ_91
GG____AA______AA____________
13._RUQ_91
______AA______AA____________
14._AMAZ_3_/2
______AA______AA____________
15._GC-03-022-2-11
GG____AA______AA____________
16._GC-03-022-2-11
GG____AA______AA____________
17._GC-03-022-2-11
GG____AA______AA____________
18._GC-03-022-2-11
GG____AA______AA____________
19._GC-03-022-2-11
GG____AA______AA____________
20._GC-03-022-2-11
GG____AA______AA____________
21._GC-03-022-2-11
GG____AA______AA____________
22._GC-03-022-2-11
GG____AA______AA____________
23._GC-03-022-2-11
GG____AA______AA____________
24._GC-03-022-2-11
GG____AA______AA____________
25._RUQ_91
GG____AA______AA____________
26._AMAZ_3_/2
______GG______AC____________
27._AMAZ_3_/2
______GG______AC____________
28._AMAZ_3_/2
______GG______AC____________
29._AMAZ_3_/2
______GG______AC____________
30._GC-03-022-2-11
GG____GG______AC____________
31._GC-03-022-2-11
GG____GG______AC____________
32._GC-03-022-2-11
GG____GG______AC____________
33._GC-03-022-2-11
GG____GG______AC____________
 57              
_Input profile
CTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_91
CTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RUQ_91
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._RUQ_91
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._RUQ_91
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: AMAZ_3_/2 RUQ_91b

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._AMAZ_3_/2 RUQ_91

identical
56 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._AMAZ_3_/2

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

3._AMAZ_3_/2

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

4._AMAZ_3_/2

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

5._AMAZ_3_/2

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

6._AMAZ_3_/2

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

7._AMAZ_3_/2

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

8._AMAZ_3_/2

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

9._AMAZ_3_/2

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

10._AMAZ_3_/2

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

12._AMAZ_3_/2 RUQ_91

identical
11 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._AMAZ_3_/2 RUQ_91

identical
11 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._AMAZ_3_/2

identical
11 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

15._AMAZ_3_/2 GC-03-022-2-11

94.7 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

94.7 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

17._AMAZ_3_/2 GC-03-022-2-11

94.7 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

18._AMAZ_3_/2 GC-03-022-2-11

94.7 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._AMAZ_3_/2 GC-03-022-2-11

94.7 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._AMAZ_3_/2 GC-03-022-2-11

94.7 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

21._AMAZ_3_/2 GC-03-022-2-11

94.7 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

22._AMAZ_3_/2 GC-03-022-2-11

94.7 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

23._AMAZ_3_/2 GC-03-022-2-11

94.7 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

24._AMAZ_3_/2 GC-03-022-2-11

94.7 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

25._AMAZ_3_/2 RUQ_91

68.8 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._AMAZ_3_/2

59.1 %
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

27._AMAZ_3_/2

59.1 %
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016

28._AMAZ_3_/2

59.1 %
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

29._AMAZ_3_/2

59.1 %
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

30._AMAZ_3_/2 GC-03-022-2-11

52.6 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

31._AMAZ_3_/2 GC-03-022-2-11

52.6 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._AMAZ_3_/2 GC-03-022-2-11

52.6 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

33._AMAZ_3_/2 GC-03-022-2-11

52.6 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1010 12TcSNP1019 13TcSNP1053 14TcSNP1062 15TcSNP1112
16TcSNP1144 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP644 32TcSNP642 33TcSNP640 34TcSNP602 35TcSNP591
36TcSNP589 37TcSNP546 38TcSNP529 39TcSNP522 40TcSNP519
41TcSNP421 42TcSNP363 43TcSNP329 44TcSNP305 45TcSNP290
46TcSNP230 47TcSNP194 48TcSNP189 49TcSNP176 50TcSNP144
51TcSNP143 52TcSNP131 53TcSNP52 54TcSNP49 55TcSNP33
56TcSNP19 57TcSNP13