SNP Profiles of EET 19 [ECU]   View Data

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 Key

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_Input profile
CGCTATGGCCCCTTCTCGCCAAGTAACT
1._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGTAACT
2._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGTAACT
3._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGTAACT
4._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGTAACT
5._GC-05-184-4-37
CGCTATGGCCCCTTCTCGGGAAGTAACT
6._GC-05-184-4-37
CGCTATGGCCCCTTCTCGGGAAGTAACT
7._GC-05-184-4-37
CGCTATGGCCCCTTCTCGGGAAGTAACT
8._GC-05-184-4-37
CGCTATGGCCCCTTCTCGGGAAGTAACT
9._GC-05-184-4-37
CGCTATGGCCCCTTCTCGGGAAGTAACT
10._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGTAACT
11._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGTAACT
12._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGTAACT
13._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGTAACT
14._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGTAACT
15._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGTAACT
16._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGTAACT
17._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGTAACT
18._GC-08-085-2-08
CGCTATGGCCCCTTCTCGGGAAGT__CT
19._RUQ_1630
CGCTATGGCC____TTCGGG______CT
20._RUQ_1630
CG________________GG______CT
21._EET_19_[ECU]
CG______CC__TTCT__GG________
22._EET_19_[ECU]
CG______CC__TTCT__GG________
23._EET_19_[ECU]
CG______CC__TTCT__GG________
24._EET_19_[ECU]
CG______CC__TTCT__GG________
25._EET_19_[ECU]
CG______CC__TTCT__GG________
26._EET_19_[ECU]
CG______CC__TTCT__GG________
27._EET_19_[ECU]
CG______CC__TTCT__GG________
28._EET_19_[ECU]
CG______CC__TTCT__GG________
29._EET_19_[ECU]
CG______CC__TTCT__GG________
30._EET_19_[ECU]
CG______CC__TTCT__GG________
31._EET_19_[ECU]
CG______CC__TTCT__GG________
32._EET_19_[ECU]
CG______CC__TTCT__GG________
33._EET_19_[ECU]
CG______CC__TTCT__GG________
34._EET_19_[ECU]
CG______CC__TTCT__GG________
35._EET_19_[ECU]
CG______CC__TTCT__GG________
36._EET_19_[ECU]
CG______CC__TTCT__GG________
37._EET_19_[ECU]
CG______CC__TTCT__GG________
38._EET_19_[ECU]
CG______CC__TTCT__GG________
39._EET_19_[ECU]
CG______CC__TTCT__GG________
40._RUQ_1630
CG______CC__TTCT__GG________
41._EET_19_[ECU]
CG______CC__TTCT__GG________
42._MITC-000062
CGGG__GGGG__AGAG__CGAGAC__GG
 151617181920212223242526  
_Input profile
CCCGCCCCATGGAGGGCCGGCTCCX_XX_X
1._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
2._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
3._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
4._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
5._GC-05-184-4-37
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
6._GC-05-184-4-37
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
7._GC-05-184-4-37
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
8._GC-05-184-4-37
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
9._GC-05-184-4-37
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
10._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
11._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
12._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
13._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
14._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
15._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
16._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
17._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
18._GC-08-085-2-08
CCCGCCCCATGGAGCCCCGGCTCCX_XX_X
19._RUQ_1630
CCCGCC__ATGGAGCCCCGGCTCCX_XX_X
20._RUQ_1630
CCCG________AG________CCX_XX_X
21._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
22._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
23._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
24._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
25._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
26._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
27._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
28._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
29._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
30._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
31._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
32._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
33._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
34._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
35._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
36._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
37._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
38._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
39._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
40._RUQ_1630
CCCG____AT__AGCCCC__CTCCX_XX_X
41._EET_19_[ECU]
CCCG____AT__AGCCCC__CTCCX_XX_X
42._MITC-000062
CCCGGGGGATAGAACGCCAGAACCX_XX_X

Input profile: EET_19_[ECU] RUQ_1630

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._EET_19_[ECU] GC-08-085-2-08

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._EET_19_[ECU] GC-08-085-2-08

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._EET_19_[ECU] GC-08-085-2-08

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._EET_19_[ECU] GC-08-085-2-08

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._EET_19_[ECU] GC-05-184-4-37

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._EET_19_[ECU] GC-05-184-4-37

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._EET_19_[ECU] GC-05-184-4-37

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._EET_19_[ECU] GC-05-184-4-37

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

9._EET_19_[ECU] GC-05-184-4-37

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._EET_19_[ECU] GC-08-085-2-08

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._EET_19_[ECU] GC-08-085-2-08

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._EET_19_[ECU] GC-08-085-2-08

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._EET_19_[ECU] GC-08-085-2-08

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._EET_19_[ECU] GC-08-085-2-08

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._EET_19_[ECU] GC-08-085-2-08

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._EET_19_[ECU] GC-08-085-2-08

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._EET_19_[ECU] GC-08-085-2-08

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._EET_19_[ECU] GC-08-085-2-08

92 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._EET_19_[ECU] RUQ_1630

87.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._EET_19_[ECU] RUQ_1630

85.7 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

22._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 3
 Dapeng Zhang, 2016

23._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 13
 Dapeng Zhang, 2016

24._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 12
 Dapeng Zhang, 2016

25._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 11
 Dapeng Zhang, 2016

26._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 10
 Dapeng Zhang, 2016

27._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 9
 Dapeng Zhang, 2016

28._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 8
 Dapeng Zhang, 2016

29._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 7
 Dapeng Zhang, 2016

30._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 6
 Dapeng Zhang, 2016

31._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 5
 Dapeng Zhang, 2016

32._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 4
 Dapeng Zhang, 2016

33._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 3
 Dapeng Zhang, 2016

34._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 2
 Dapeng Zhang, 2016

35._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 1
 Dapeng Zhang, 2016

36._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 4 > FP
 Dapeng Zhang, 2016

37._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 2 > FP
 Dapeng Zhang, 2016

38._EET_19_[ECU]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 5
 Dapeng Zhang, 2016

39._EET_19_[ECU]

84.6 %
13 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

40._EET_19_[ECU] RUQ_1630

84.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

41._EET_19_[ECU]

84.6 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F462 T9
 Dapeng Zhang, 2016

42._EET_19_[ECU] MITC-000062

45.5 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144