SNP Profiles of ICS 43   View Data

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 Key

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_Input profile
CCCTATAGCTCCCTCCCGCCAGGTAGCT
1._RUQ_144
GGCTATAGCT____CCCGGG______CT
2._RUQ_144
GG______CT__CTCC__GG________
3._ICS_43
GG______CT__CTCC__GG________
4._RUQ_144
GG________________GG______CT
5._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG__GGAACC
6._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG__GGAACC
7._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG__GGAACC
8._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG__GGAACC
9._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG__GGAACC
10._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG__GGAACC
11._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG__GGAACC
12._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG__GGAACC
13._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG__GGAACC
14._ICS_43
CC______CC__CCCC__GG________
15._ICS_43
CC______CC__CCCC__GG________
16._ICS_43
CC______CC__CCCC__GG________
17._ICS_43
CC______CC__CCCC__GG________
18._ICS_43
CC______CC__CCCC__GG________
19._ICS_43
CC______CC__CCCC__GG________
20._ICS_43
CC______CC__CCCC__GG________
21._ICS_43
CC______CC__CCCC__GG________
22._ICS_43
CC______CC__CCCC__GG________
23._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG__GGAACC
24._RUQ_144
CCAG__AGAG__AGGG__CCAGAC__AG
25._ICS_43_Fld#_164_Plt#_1
CCAG__AGAG__AGGG__CCAGAC__AG
26._ICS_43
CC______CC__CCCC__GG________
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_Input profile
AACCCCCTAAAGGGCGACGGCTACX_XX_X
1._RUQ_144
AACCCC__AAAGGGCGACGGCTACX_XX_X
2._RUQ_144
AACC____AA__GGCGAC__CTACX_XX_X
3._ICS_43
AACC____AA__GG__AC__CTACX_XX_X
4._RUQ_144
AACC________GG________ACX_XX_X
5._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
6._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
7._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
8._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
9._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
10._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
11._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
12._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
13._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
14._ICS_43
CCCC____AA__GGCCAA__TTAAX_XX_X
15._ICS_43
CCCC____AA__GGCCAA__TTAAX_XX_X
16._ICS_43
CCCC____AA__GGCCAA__TTAAX_XX_X
17._ICS_43
CCCC____AA__GGCCAA__TTAAX_XX_X
18._ICS_43
CCCC____AA__GGCCAA__TTAAX_XX_X
19._ICS_43
CCCC____AA__GGCCAA__TTAAX_XX_X
20._ICS_43
CCCC____AA__GGCCAA__TTAAX_XX_X
21._ICS_43
CCCC____AA__GGCCAA__TTAAX_XX_X
22._ICS_43
CCCC____AA__GGCCAA__TTAAX_XX_X
23._GC-01-051-3-06
CCCCCCTTAAGG__CCAAGGTTAAX_XX_X
24._RUQ_144
AACCGGAGAAAGGGCGACGGAGACX_XX_X
25._ICS_43_Fld#_164_Plt#_1
AACCGGAGAAAGGGCGACGGAGACX_XX_X
26._ICS_43
CCCC____AA____CCAA__TTAAX_XX_X

Input profile: ICS_43 ICS43

 
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._ICS_43 RUQ_144

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._ICS_43 RUQ_144

84.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._ICS_43

83.3 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

4._ICS_43 RUQ_144

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

5._ICS_43 GC-01-051-3-06

62 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

6._ICS_43 GC-01-051-3-06

62 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

7._ICS_43 GC-01-051-3-06

62 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

8._ICS_43 GC-01-051-3-06

62 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._ICS_43 GC-01-051-3-06

62 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._ICS_43 GC-01-051-3-06

62 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._ICS_43 GC-01-051-3-06

62 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

12._ICS_43 GC-01-051-3-06

62 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

13._ICS_43 GC-01-051-3-06

62 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._ICS_43

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

15._ICS_43

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._ICS_43

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

17._ICS_43

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

18._ICS_43

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

19._ICS_43

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

20._ICS_43

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

21._ICS_43

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

22._ICS_43

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

23._ICS_43 GC-01-051-3-06

60.4 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

24._ICS_43 RUQ_144

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

25._ICS_43 ICS_43_Fld#_164_Plt#_1

59.1 %
22 shared markers

USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

26._ICS_43

58.3 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144