SNP Profiles of ICS 1   View Data

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 Key

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_Input profile
CGCTTTGGCCCCCTCTGGCGAGGTAGCC
1._RUQ_847B
GG________________CG______CT
2._RUQ_847
GG________________CG______CT
3._RUQ_847
CCTTAAAATTCCTTCCCGCGAGGTGGCT
4._ICS_1
GG______TT__TTCC__CG________
5._ICS_1
GG______TT__TTCC__CG________
6._ICS_1
GG______TT__TTCC__CG________
7._ICS_1
GG______TT__TTCC__CG________
8._ICS_1
GG______TT__TTCC__CG________
9._RUQ_847
GG______TT__TTCC__CG________
10._RUQ_847
GG______TT__TTCC__CG________
11._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
12._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
13._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
14._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
15._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
16._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
17._ICS_1
GG______TT__TTCC__CG________
18._ICS_1
GG______TT__TTCC____________
19._ICS_1
GG______CC__TTCC__GG________
20._RUQ_847
GGTTAAAATT____CCCGCG______CT
21._RUQ_847
CCAA__AAAA__AAGG__CGAGAC__AG
22._MITC-000297
CCAA__AAAA__AAGG__CGAGAC__AG
23._ICS_1_Fld#_73_Plt#_2
CCAA__AAAA__AAGG__CGAGAC__AG
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_Input profile
CCCCGGCTTTAGAGCGACAGCTCCX_XX_X
1._RUQ_847B
ACCC________AG________AAX_XX_X
2._RUQ_847
ACCC________AG________AAX_XX_X
3._RUQ_847
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
4._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
5._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
6._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
7._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
8._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
9._RUQ_847
ACCC____AT__AGCGAA__CCAAX_XX_X
10._RUQ_847
ACCC____AT__AGCGAA__CCAAX_XX_X
11._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
12._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
13._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
14._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
15._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
16._NA
AC__CGCTATAAAGCGAAAGCCAAX_XX_X
17._ICS_1
AC______AT__AGCGAA__CCAAX_XX_X
18._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
19._ICS_1
CCCG____AA__AACCAA__CCACX_XX_X
20._RUQ_847
AACCCG__ATAAAGCGAAAGCCAAX_XX_X
21._RUQ_847
ACCCCGAGATAAAGCGAAAGGGAAX_XX_X
22._MITC-000297
ACCCCGAGATAAAGCGAAAGGGAAX_XX_X
23._ICS_1_Fld#_73_Plt#_2
ACCCCGAGATAAAGCGAAAGGGAAX_XX_X

Input profile: ICS_1 ICS1

 
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._ICS_1 RUQ_847B

64.3 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._ICS_1 RUQ_847

64.3 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._ICS_1 RUQ_847

59.6 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

4._ICS_1

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

5._ICS_1

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

6._ICS_1

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

7._ICS_1

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

8._ICS_1

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._ICS_1 RUQ_847

57.7 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._ICS_1 RUQ_847

57.7 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._ICS_1 NA

57.7 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._ICS_1 NA

57.7 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._ICS_1 NA

57.7 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._ICS_1 NA

57.7 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._ICS_1 NA

57.7 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._ICS_1 NA

56 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._ICS_1

54.2 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

18._ICS_1

54.2 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

19._ICS_1

53.8 %
13 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._ICS_1 RUQ_847

50 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._ICS_1 RUQ_847

40.9 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._ICS_1 MITC-000297

40.9 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

23._ICS_1 ICS_1_Fld#_73_Plt#_2

40.9 %
22 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144