SNP Profiles of NA 26   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CGCCTTGGCTCGCTCCGGGGGGTTAACC
1._NA_26
CG______CT__CTCC__CC________
2._NA_26
CG______CT__CTCC__CC________
3._NA_26
CG______CT__CTCC__CC________
4._NA_26
CG______CT__CTCC__CC________
5._NA_26
CG______CT__CTCC__CC________
6._RUQ_1230
CG______CT__CTCC__CC________
7._GC-04-021-2-03
CGCCTTGGCTCGCTCCCCCC__TTAACC
8._GC-04-021-2-03
CGCCTTGGCTCGCTCCCCCC__TTAACC
9._GC-04-021-2-03
CGCCTTGGCTCGCTCCCCCC__TTAACC
10._GC-04-021-2-03
CGCCTTGGCTCGCTCCCCCC__TTAACC
11._GC-04-021-2-03
CGCCTTGGCTCGCTCCCCCC__TTAACC
12._RUQ_1230
CGCCTTGGCT____CCCCCC______CC
13._RUQ_1230
CG________________CC______CC
14._NA_26
CG______CC__TTTT__CC________
15._RUQ_1230
CGGG__GGAG__AGGG__GGGGAA__GG
16._MITC-000034
CGGG__GGAG__AGGG__GGGGAA__GG
 151617181920212223242526  
_Input profile
ACGGCCCTATGGAGCGAAGGCTACX_XX_X
1._NA_26
ACGG____AT__AGCGAA__CTACX_XX_X
2._NA_26
ACGG____AT__AGCGAA__CTACX_XX_X
3._NA_26
ACGG____AT__AGCGAA__CTACX_XX_X
4._NA_26
ACGG____AT__AGCGAA__CTACX_XX_X
5._NA_26
ACGG____AT__AGCGAA__CTACX_XX_X
6._RUQ_1230
ACGG____AT__AGCGAA__CTACX_XX_X
7._GC-04-021-2-03
ACGGCCCTATGGAGCGAAGGCTACX_XX_X
8._GC-04-021-2-03
ACGGCCCTATGGAGCGAAGGCTACX_XX_X
9._GC-04-021-2-03
ACGGCCCTATGGAGCGAAGGCTACX_XX_X
10._GC-04-021-2-03
ACGGCCCTATGGAGCGAAGGCTACX_XX_X
11._GC-04-021-2-03
ACGGCCCTATGGAGCGAAGGCTACX_XX_X
12._RUQ_1230
ACGGCC__ATGGAGCGAAGGCTACX_XX_X
13._RUQ_1230
ACGG________AG________ACX_XX_X
14._NA_26
ACGG____AT__AGGGAC__CTCCX_XX_X
15._RUQ_1230
ACGGGGAGATGGAGCGAAGGAGACX_XX_X
16._MITC-000034
ACGGGGAGATGGAGCGAAGGAGACX_XX_X

Input profile: NA_26 RUQ_1230

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._NA_26

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 8 > FP
 Dapeng Zhang, 2016

2._NA_26

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 7 > FP
 Dapeng Zhang, 2016

3._NA_26

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 6 > FP
 Dapeng Zhang, 2016

4._NA_26

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 4 > FP
 Dapeng Zhang, 2016

5._NA_26

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._NA_26 RUQ_1230

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._NA_26 GC-04-021-2-03

92 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

8._NA_26 GC-04-021-2-03

92 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

9._NA_26 GC-04-021-2-03

92 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018

10._NA_26 GC-04-021-2-03

92 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

11._NA_26 GC-04-021-2-03

92 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._NA_26 RUQ_1230

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._NA_26 RUQ_1230

85.7 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

14._NA_26

65.4 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E352 T5
 Dapeng Zhang, 2016

15._NA_26 RUQ_1230

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._NA_26 MITC-000034

59.1 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144