SNP Profiles of PA121[PER]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCCTTTGGCCCCTTCCGGCCGGTTAATT
1._GC-05-011-1-11
GGCTTTGGCCCCTTCCCCGG__TTAATT
2._GC-05-011-1-11
GGCTTTGGCCCCTTCCCCGG__TTAATT
3._PA_121_[PER]
GG______CC__TTCC__GG________
4._GC-05-011-1-11
GGCTTTGGCCCCTTCCCCGG__TTAATT
5._RUQ_1059
GGCTTTGGCC____CCCCGG______TT
6._PA_121_[PER]
GG______CC__TTCC__GG________
7._PA_121_[PER]
GG______CC__TTCC__GG________
8._RUQ_1059
GG______CC__TTCC__GG________
9._PA_121_[PER]
GG______CC__TTCC__GG________
10._PA_121_[PER]
GG______CC__TTCC__GG________
11._PA_121_[PER]
GG______CC__TTCC__GG________
12._RUQ_1059
GG________________GG______TT
13._GC-05-011-1-11
CGTTTTAACCCCTTCCCGGGAATTAATT
14._PA_121_[PER]
CG______CC__TTCC__GG________
15._GC-05-011-1-11
CGTTATAGCCCCCTTTGGGGAATTAACT
16._RUQ_1059
CCAG__GGGG__AAGG__CCGGAA__AA
17._PA_121_[PER]
CG______CC__CTTT__GG________
 151617181920212223242526  
_Input profile
CCCGCCCTAAGGAAGGAAGGCCACX_XX_X
1._GC-05-011-1-11
CCCGCCCTAAGGAACCAAGGCCACX_XX_X
2._GC-05-011-1-11
CCCGCCCTAAGGAACCAAGGCCACX_XX_X
3._PA_121_[PER]
CCCG____AA__AA__AA__CCACX_XX_X
4._GC-05-011-1-11
CCCGCCCTAAGGAACCAAGG__ACX_XX_X
5._RUQ_1059
CCCGCC__AAGGAACCAAGGCCACX_XX_X
6._PA_121_[PER]
CCCG____AA__AACCAA__CCACX_XX_X
7._PA_121_[PER]
CCCG____AA__AACCAA__CCACX_XX_X
8._RUQ_1059
CCCG____AA__AACCAA__CCACX_XX_X
9._PA_121_[PER]
CCCG____AA__AACCAA__CCACX_XX_X
10._PA_121_[PER]
CCCG____AA__AACCAA__CCACX_XX_X
11._PA_121_[PER]
CCCG____AA__AACCAA____ACX_XX_X
12._RUQ_1059
CCCG________AA________ACX_XX_X
13._GC-05-011-1-11
CCCCCCCTAAGGAACCAAGGTTCCX_XX_X
14._PA_121_[PER]
CCCC____AA__AACCAA__TTCCX_XX_X
15._GC-05-011-1-11
CCGGCCCCTTGGAACCAAGGCTCCX_XX_X
16._RUQ_1059
CCCGGGAGAAGGAAGGAAGGGGACX_XX_X
17._PA_121_[PER]
CCGG____TT__AACCAA__CTCCX_XX_X

Input profile: PA_121_[PER] RUQ_1059

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._PA_121_[PER] GC-05-011-1-11

84 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._PA_121_[PER] GC-05-011-1-11

84 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._PA_121_[PER]

83.3 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D393
 Dapeng Zhang, 2016

4._PA_121_[PER] GC-05-011-1-11

83.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

5._PA_121_[PER] RUQ_1059

80 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._PA_121_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 3
 Dapeng Zhang, 2016

7._PA_121_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 1 > FP
 Dapeng Zhang, 2016

8._PA_121_[PER] RUQ_1059

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_121_[PER]

76.9 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P60 102
 Dapeng Zhang, 2016

10._PA_121_[PER]

76.9 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0233
 Dapeng Zhang, 2016

11._PA_121_[PER]

75 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 5 > FP
 Dapeng Zhang, 2016

12._PA_121_[PER] RUQ_1059

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

13._PA_121_[PER] GC-05-011-1-11

71.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._PA_121_[PER]

65.4 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._PA_121_[PER] GC-05-011-1-11

61.5 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

16._PA_121_[PER] RUQ_1059

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

17._PA_121_[PER]

50 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144