SNP Profiles of GU 261 /P   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGCCTTGGCCCCCCCCGGCCGGGGAACC
1._GU_261_/P___
CCCCTTGGCC____CCCCGG______CC
2._GU_261_/P___
CC______CC__CCCC__GG________
3._GU_261_/P___
CC______CC__CCCC__GG________
4._GU_261_/P___
CC______CC__CCCC__GG________
5._GU_261_/P___
CC______CC__CCCC__GG________
6._GU_261_/P___
CC______CC__CCCC__GG________
7._GU_261_/P___
CC______CC__CCCC__GG________
8._GU_261_/P___
CC______CC__CCCC__GG________
9._GU_261_/P___
CC______CC__CCCC__GG________
10._GU_261_/P___
CC______CC__CCCC__GG________
11._GU_261_/P___
CC______CC__CCCC__GG________
12._GU_261_/P___
CC______CC__CCCC__GG________
13._GU_261_/P___
CC______CC__CCCC__GG________
14._GU_261_/P___
CC______CC__CCCC__GG________
15._GU_261_/P___
CC______CC__CCCC__GG________
16._GU_261_/P___
CC______CC__CCCC__GG________
17._GU_261_/P___
CC______CC__CCCC__GG________
18._GU_261_/P___
CC______CC__CCCC__GG________
19._GU_261_/P___
CC______CC__CCCC__GG________
20._GU_261_/P___
CC______CC__CCCC__GG________
21._GU_261_/P___
CC______CC__CCCC__GG________
22._GU_261_/P___
CC______CC__CCCC__GG________
23._GU_261_/P___
CC______CC__CCCC__GG________
24._GU_261_/P___
CC______CC__CCCC__GG________
25._GU_261_/P___
CC______CC__CCCC__GG________
26._GU_261_/P___
CC______CC__CCCC__GG________
27._GU_261_/P___
CC______CC__CCCC__GG________
28._GU_261_/P___
CC______CC__CCCC__GG________
29._GU_261_/P___
CC______CC__CCCC__GG________
30._GU_261_/P___
CC______CC__CCCC__GG________
31._GU_261_/P___
CC______CC__CCCC__GG________
32._GU_261_/P___
CC______CC__CCCC__GG________
33._GU_261_/P___
CC______CC____CC__GG________
34._GU_261_/P___
CC______CC__CCCC__GG________
35._GU_261_/P___
CC______CC__CC____GG________
36._GU_261_/P___
CC________________GG______CC
37._GU_261_/P___
CC______CC__CCCC__GG________
38._GU_261_/P___
GGGG__GGGG__GGGG__CCGGCC__GG
 15 16 17 18 19 20 21 22 23 24 25 26   
_Input profile
ACCCCCTTAAGGGGGGAAGGTTAAX_XX_X
1._GU_261_/P___
ACCCCC__AAGGGGCCAAGGTTAAX_XX_X
2._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
3._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
4._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
5._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
6._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
7._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
8._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
9._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
10._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
11._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
12._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
13._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
14._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
15._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
16._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
17._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
18._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
19._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
20._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
21._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
22._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
23._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
24._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
25._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
26._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
27._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
28._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
29._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
30._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
31._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
32._GU_261_/P___
ACCC____AA__GGCCAA____AAX_XX_X
33._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
34._GU_261_/P___
ACCC____AA__GGCCAA____AAX_XX_X
35._GU_261_/P___
ACCC____AA__GGCCAA__TTAAX_XX_X
36._GU_261_/P___
ACCC________GG________AAX_XX_X
37._GU_261_/P___
ACCC____AA__GGCCAC____AAX_XX_X
38._GU_261_/P___
ACCCGGAAAAGGGGGGAAGGAAAAX_XX_X

Input profile: GU_261_/P RUQ_1370

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._GU_261_/P RUQ_1370

80 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

3._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

4._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

5._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

6._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

7._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

8._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

9._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

10._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

11._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

12._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

13._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

14._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

15._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

16._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

17._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

18._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

19._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

20._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

21._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

22._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

23._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

24._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

25._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

26._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

27._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

28._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

29._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

30._GU_261_/P RUQ_1370

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._GU_261_/P

76.9 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

32._GU_261_/P

75 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

33._GU_261_/P

75 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

34._GU_261_/P

75 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

35._GU_261_/P

75 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

36._GU_261_/P RUQ_1370

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

37._GU_261_/P

70.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

38._GU_261_/P RUQ_1370

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144