SNP Profiles of GU 133 /C   View Data

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 Key

 1234567891011121314
_Input profile
CGCCTTGGCCCCCCCCGGCCGGGGAACC
1._GC-08-164-4-07
CGCCTTGGCCCCCCCCCCGG__GGAACC
2._GC-08-164-4-07
CGCCTTGGCCCCCCCCCCGG__GGAACC
3._GC-01-116-6-13
CGCCTTGGCCCCCCCCCCGG__GGAACC
4._GC-01-116-6-13
CGCCTTGGCCCCCCCCCCGG__GGAACC
5._GC-01-116-6-13
CGCCTTGGCCCCCCCCCCGG__GGAACC
6._GC-08-164-4-07
CGCCTTGGCCCCCCCCCCGG__GGAACC
7._GC-08-164-4-07
CGCCTTGGCCCCCCCCCCGG__GGAACC
8._GC-08-164-4-07
CGCCTTGGCCCCCCCCCCGG__GGAACC
9._GC-08-164-4-07
CGCCTTGGCCCCCCCCCCGG__GGAACC
10._GC-01-116-6-13
CGCCTTGGCCCCCCCCCCGG__GGAACC
11._RUQ_190
CG________________GG______CC
12._RUQ_190
CGCCTTGGCC____CCCCGG______CC
13._GU_133_/C
CG______CC__CCCC__GG________
14._GU_133_/C
CG______CC__CCCC__GG________
15._GU_133_/C
CG______CC__CCCC__GG________
16._GU_133_/C
CG______CC__CCCC__GG________
17._GU_133_/C
CG______CC__CCCC__GG________
18._GU_133_/C
CG______CC__CCCC__GG________
19._GU_133_/C
CG______CC__CCCC__GG________
20._GU_133_/C
CG______CC__CCCC__GG________
21._RUQ_190
CG______CC__CCCC__GG________
22._GU_133_/C
CG______CC__CCCC__GG________
23._GU_133_/C
CG______CC__CCCC__GG________
24._GU_133_/C
CG______CC__CC____GG________
25._GC-01-116-6-13
CGCCTTGGCCCCCC__CCGGAA__AACC
26._GC-01-116-6-13
CGGG__GGGG__GGGG__CCGGCC__GG
27._MITC-000670
CGGG__GGGG__GGGG__CCGGCC__GG
 151617181920212223242526  
_Input profile
ACCCCCTTAAGGGGGGAAGGTTAAX_XX_X
1._GC-08-164-4-07
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
2._GC-08-164-4-07
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
3._GC-01-116-6-13
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
4._GC-01-116-6-13
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
5._GC-01-116-6-13
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
6._GC-08-164-4-07
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
7._GC-08-164-4-07
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
8._GC-08-164-4-07
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
9._GC-08-164-4-07
ACCCCCTTAAGGGGCC__GGTTAAX_XX_X
10._GC-01-116-6-13
ACCCCCTTAAGG__CCAAGGTTAAX_XX_X
11._RUQ_190
ACCC________GG________AAX_XX_X
12._RUQ_190
ACCCCC__AAGGGGCCAAGGTTAAX_XX_X
13._GU_133_/C
ACCC____AA__GGCCAA__TTAAX_XX_X
14._GU_133_/C
ACCC____AA__GGCCAA__TTAAX_XX_X
15._GU_133_/C
ACCC____AA__GGCCAA__TTAAX_XX_X
16._GU_133_/C
ACCC____AA__GGCCAA__TTAAX_XX_X
17._GU_133_/C
ACCC____AA__GGCCAA__TTAAX_XX_X
18._GU_133_/C
ACCC____AA__GGCCAA__TTAAX_XX_X
19._GU_133_/C
ACCC____AA__GGCCAA__TTAAX_XX_X
20._GU_133_/C
ACCC____AA__GGCCAA__TTAAX_XX_X
21._RUQ_190
ACCC____AA__GGCCAA__TTAAX_XX_X
22._GU_133_/C
ACCC____AA____CCAA__TTAAX_XX_X
23._GU_133_/C
ACCC____AA__GGCC____TTAAX_XX_X
24._GU_133_/C
ACCC____AA____CCAA__TTAAX_XX_X
25._GC-01-116-6-13
ACCCCC__AAGG__CCAAGGTTAAX_XX_X
26._GC-01-116-6-13
ACCCGGAAAAGGGGGGAAGGAAAAX_XX_X
27._MITC-000670
ACCCGGAAAAGGGGGGAAGGAAAAX_XX_X

Input profile: GU_133_/C RUQ_190

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._GU_133_/C GC-08-164-4-07

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._GU_133_/C GC-08-164-4-07

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._GU_133_/C GC-01-116-6-13

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_133_/C GC-08-164-4-07

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._GU_133_/C GC-08-164-4-07

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._GU_133_/C GC-08-164-4-07

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

9._GU_133_/C GC-08-164-4-07

87.5 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._GU_133_/C GC-01-116-6-13

87.5 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._GU_133_/C RUQ_190

85.7 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

12._GU_133_/C RUQ_190

85 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._GU_133_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._GU_133_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

15._GU_133_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

16._GU_133_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

17._GU_133_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

18._GU_133_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

19._GU_133_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

20._GU_133_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

21._GU_133_/C RUQ_190

84.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._GU_133_/C

83.3 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

23._GU_133_/C

83.3 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

24._GU_133_/C

81.8 %
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

25._GU_133_/C GC-01-116-6-13

81.8 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

26._GU_133_/C GC-01-116-6-13

59.1 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

59.1 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144