SNP Profiles of PA 137 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
GGCCTTGGCCCCCTCCGGCCAGGTAATT
1._RUQ_36
____TTGG______CC____________
2._RUQ_36
CG__________CTCC____________
3._PA_137_[PER]
CC______CC__CTCC__GG________
4._PA_137_[PER]
CC______CC__CTCC__GG________
5._GC-05-009-1-09
CCCCTTGGCCCCCTCCCCGGAAGTAATT
6._GC-05-009-1-09
CCCCTTGGCCCCCTCCCCGGAAGTAATT
7._GC-05-009-1-09
CCCCTTGGCCCCCTCCCCGGAAGTAATT
8._GC-05-009-1-09
CCCCTTGGCCCCCTCCCCGGAAGTAATT
9._GC-05-009-1-09
CCCCTTGGCCCCCTCCCCGGAAGTAATT
10._GC-05-117-3-19
CCCCTTGGCCCCCTCCCCGGAAGTAATT
11._GC-05-117-3-19
CCCCTTGGCCCCCTCCCCGGAAGTAATT
12._GC-05-117-3-19
CCCCTTGGCCCCCTCCCCGGAAGTAATT
13._GC-05-117-3-19
CCCCTTGGCCCCCTCCCCGGAAGTAATT
14._GC-05-117-3-19
CCCCTTGGCCCCCTCCCCGGAAGTAATT
15._RUQ_1081
CCCCTTGGCC____CCCCGG______TT
16._RUQ_36
CC______CC__CTCC__GG________
17._RUQ_1081
CC______CC__CTCC__GG________
18._RUQ_1081
CC______CC__CTCC__GG________
19._PA_137_[PER]
CC______CC__CTCC__GG________
20._PA_137_[PER]
CC______CC__CTCCCCGG________
21._PA_137_[PER]
CC______CC__CTCC__GG________
22._PA_137_[PER]
CC______CC__CTCC__GG________
23._PA_137_[PER]
CC______CC__CTCC__GG________
24._PA_137_[PER]
CC______CC__CTCC__GG________
25._PA_137_[PER]
CC______CC__CTCC__GG________
26._PA_137_[PER]
CC______CC__CTCC__GG________
27._PA_137_[PER]
CC______CC__CTCC__GG________
28._PA_137_[PER]
CC______CC__CTCC__GG________
29._PA_137_[PER]
CC______CC__CTCC__GG________
30._PA_137_[PER]
CC______CC__CTCC__GG________
31._RUQ_1081
CC________________GG______TT
32._RUQ_36
CC________________GG______TT
33._RUQ_36
GGGG__GGGG__AGGG__CCAGAC__AA
34._MITC-000400
GGGG__GGGG__AGGG__CCAGAC__AA
35._PA_137_[PER]_Fld#_201_Plt#_2
GGGG__GGGG__AGGG__CCAGAC__AA
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_Input profile
CCCGCCCCAAGGAGGGACGGCTACX_XX_X
1._RUQ_36
__CGCC__AA__AG__AC____ACX_XX_X
2._RUQ_36
__CG____AA__AGCGAC__CTACX_XX_X
3._PA_137_[PER]
CCCG____AA__AG__AC__CTACX_XX_X
4._PA_137_[PER]
CCCG____AA__AG__AC__CTACX_XX_X
5._GC-05-009-1-09
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
6._GC-05-009-1-09
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
7._GC-05-009-1-09
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
8._GC-05-009-1-09
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
9._GC-05-009-1-09
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
10._GC-05-117-3-19
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
11._GC-05-117-3-19
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
12._GC-05-117-3-19
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
13._GC-05-117-3-19
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
14._GC-05-117-3-19
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
15._RUQ_1081
CCCGCC__AAGGAGCCACGGCTACX_XX_X
16._RUQ_36
CCCG____AA__AGCCAC__CTACX_XX_X
17._RUQ_1081
CCCG____AA__AGCCAC__CTACX_XX_X
18._RUQ_1081
CCCG____AA__AGCCAC__CTACX_XX_X
19._PA_137_[PER]
CCCG____AA__AGCCAC__CTACX_XX_X
20._PA_137_[PER]
CCCG____AA__AG__AC__CTACX_XX_X
21._PA_137_[PER]
CCCG____AA__AGCCAA__CTACX_XX_X
22._PA_137_[PER]
CCCG____AA__AGCCAA__CTACX_XX_X
23._PA_137_[PER]
CCCG____AA__AGCCAA__CTACX_XX_X
24._PA_137_[PER]
CCCG____AA__AGCCAA__CTACX_XX_X
25._PA_137_[PER]
CCCG____AA__AGCCAA__CTACX_XX_X
26._PA_137_[PER]
CCCG____AA__AGCCAA__CTACX_XX_X
27._PA_137_[PER]
CCCG____AA__AGCCAA__CTACX_XX_X
28._PA_137_[PER]
CCCG____AA__AGCCAA__CTACX_XX_X
29._PA_137_[PER]
CCCG____AA__AGCCAA__CTACX_XX_X
30._PA_137_[PER]
CCCG____AA__AGCCAA__CTACX_XX_X
31._RUQ_1081
CCCG________AG________ACX_XX_X
32._RUQ_36
CCCG________AG________ACX_XX_X
33._RUQ_36
CCCGGGGGAAGGAGGGACGGAGACX_XX_X
34._MITC-000400
CCCGGGGGAAGGAGGGACGGAGACX_XX_X
35._PA_137_[PER]_Fld#_201_Plt#_2
CCCGGGGGAAGGAGGGACGGAGACX_XX_X

Input profile: PA_137_[PER] PA137[PER]

 
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._PA_137_[PER] RUQ_36

identical
9 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_137_[PER] RUQ_36

90 %
10 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._PA_137_[PER]

83.3 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

4._PA_137_[PER]

83.3 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

5._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

8._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

11._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._PA_137_[PER] RUQ_1081

80 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._PA_137_[PER] RUQ_36

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._PA_137_[PER] RUQ_1081

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._PA_137_[PER] RUQ_1081

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._PA_137_[PER]

76.9 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

20._PA_137_[PER]

76.9 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

21._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

22._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

23._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

24._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

25._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

26._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

27._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

28._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

29._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

30._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

31._PA_137_[PER] RUQ_1081

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

32._PA_137_[PER] RUQ_36

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

33._PA_137_[PER] RUQ_36

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

59.1 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

59.1 %
22 shared markers

USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144