SNP Profiles of NA33   View Data

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 Key

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_Input profile
GGCCTTAGCCCGCTCTCGCCGGTTAACC
1._GC-01-6-1-06
CCCCTTAGCCCGCTCTCGGG__TTAACC
2._GC-01-6-1-06
CCCCTTAGCCCGCTCTCGGG__TTAACC
3._GC-01-6-1-06
CCCCTTAGCCCGCTCTCGGG__TTAACC
4._GC-01-6-1-06
CCCCTTAGCCCGCTCTCGGG__TTAACC
5._GC-01-006-1-06
CCCCTTAGCCCGCTCTCGGG__TTAACC
6._GC-01-006-1-06
CCCCTTAGCCCGCTCTCGGG__TTAACC
7._GC-01-006-1-06
CCCCTTAGCCCGCTCTCGGG__TTAACC
8._GC-01-006-1-06
CCCCTTAGCCCGCTCTCGGG__TTAACC
9._GC-01-006-1-06
CCCCTTAGCCCGCTCTCGGG__TTAACC
10._GC-01-006-1-06
CCCCTTAGCCCGCTCTCGGG__TTAACC
11._GC-01-006-1-06
CCCCTTAGCCCGCTCTCGGG__TTAACC
12._GC-01-006-1-06
CCCCTTAGCCCGCTCTCGGG__TTAACC
13._NA_33
CC______CC__CTCT__GG________
14._NA_33
CC______CC__CTCT__GG________
15._NA_33
CC______CC__CTCT__GG________
16._NA_33
CC______CC__CTCT__GG________
17._NA_33
CC______CC__CTCT__GG________
18._NA_33
CC______CC__CTCT__GG________
19._NA_33
CC______CC__CTCT__GG________
20._NA_33
CC______CC__CTCT__GG________
21._NA_33
CC______CC__CTCT__GG________
22._NA_33
CC______CC__CTCT__GG________
23._NA_33
CC______CC__CTCT__GG________
24._NA_33
CC______CC__CTCT__GG________
25._NA_33
CC______CC__CTCT__GG________
26._NA_33
CC______CC__CTCT__GG________
27._NA_33
CG______CT__CTCC__CC________
28._RUQ_1577
CCCCTTAGCC____CCCCCG______CC
29._NA_33
GGGG__AGGG__AGAG__CCGGAA__GG
30._GC-01-6-1-6
GGGG__AGGG__AGAG__CCGGAA__GG
31._MITC-000715
GGGG__AGGG__AGAG__CCGGAA__GG
32._NA_33
CC______CC__TTCC__CG________
33._RUQ_1577
CC______CC__TTCC__CG________
34._RUQ_1577
CC________________CG______CC
35._RUQ_1577
GGGG__AGGG__AAGG__CGGGAA__GG
 151617181920212223242526  
_Input profile
ACGGCGCCATGGGGGGACGGCTACX_XX_X
1._GC-01-6-1-06
ACGGCGCCATGGGGCCACGGCTACX_XX_X
2._GC-01-6-1-06
ACGGCGCCATGGGGCCACGGCTACX_XX_X
3._GC-01-6-1-06
ACGGCGCCATGGGGCCACGGCTACX_XX_X
4._GC-01-6-1-06
ACGGCGCCATGGGGCCACGGCTACX_XX_X
5._GC-01-006-1-06
ACGGCGCCATGGGGCCACGGCTACX_XX_X
6._GC-01-006-1-06
ACGGCGCCATGGGGCCACGGCTACX_XX_X
7._GC-01-006-1-06
ACGGCGCCATGGGGCCACGGCTACX_XX_X
8._GC-01-006-1-06
ACGGCGCCATGGGGCCACGGCTACX_XX_X
9._GC-01-006-1-06
ACGGCGCCATGGGGCCACGGCTACX_XX_X
10._GC-01-006-1-06
ACGGCGCCATGGGGCCACGGCTACX_XX_X
11._GC-01-006-1-06
ACGGCGCCATGGGGCCACGGCTACX_XX_X
12._GC-01-006-1-06
ACGGCGCCATGGGGCCACGGCTACX_XX_X
13._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
14._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
15._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
16._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
17._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
18._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
19._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
20._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
21._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
22._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
23._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
24._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
25._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
26._NA_33
ACGG____AT__GGCCAC__CTACX_XX_X
27._NA_33
AAGG____AT__AGCGAA__CTACX_XX_X
28._RUQ_1577
AAGGCC__AAGGAGCGACGGCCCCX_XX_X
29._NA_33
ACGGCGGGATGGGGGGACGGAGACX_XX_X
30._GC-01-6-1-6
ACGGCGGGATGGGGGGACGGAGACX_XX_X
31._MITC-000715
ACGGCGGGATGGGGGGACGGAGACX_XX_X
32._NA_33
AAGG____AA__AGGGAC__CCCCX_XX_X
33._RUQ_1577
AAGG____AA__AGCGAC__CCCCX_XX_X
34._RUQ_1577
AAGG________AG________CCX_XX_X
35._RUQ_1577
AAGGGGGGAAGGAGCGACGGGGCCX_XX_X

Input profile: NA_33 NA33

 
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._NA_33 GC-01-6-1-06

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

2._NA_33 GC-01-6-1-06

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

3._NA_33 GC-01-6-1-06

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

4._NA_33 GC-01-6-1-06

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

5._NA_33 GC-01-006-1-06

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

6._NA_33 GC-01-006-1-06

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

7._NA_33 GC-01-006-1-06

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

8._NA_33 GC-01-006-1-06

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

9._NA_33 GC-01-006-1-06

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

10._NA_33 GC-01-006-1-06

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

11._NA_33 GC-01-006-1-06

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

12._NA_33 GC-01-006-1-06

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

13._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

14._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

16._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

17._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

18._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

19._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

20._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

21._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

22._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

23._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

24._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

25._NA_33

76.9 %
13 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

26._NA_33

76.9 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

27._NA_33

73.1 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: M6 18, 19
 Dapeng Zhang, 2016

28._NA_33 RUQ_1577

70 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._NA_33

63.6 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: FP 4
 Mars, 2018

30._NA_33 GC-01-6-1-6

63.6 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: 1 > FP5
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

31._NA_33 MITC-000715

63.6 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

32._NA_33

61.5 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

33._NA_33 RUQ_1577

57.7 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

34._NA_33 RUQ_1577

57.1 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

35._NA_33 RUQ_1577

47.7 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144