SNP Profiles of PA120[PER]   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGCTTTGGCTCCCTCTGGCGAGGTAGCC
1._RUQ_852
CGCTTTGGCC____CCCCGG______TT
2._RUQ_852B
CG________________GG________
3._RUQ_852
CG________________GG______TT
4._RUQ_852
CGAG__GGGG__AGGG__CCGGAA__AA
5._PA_120_[PER]_Fld#_172_Plt#_5
CGGG__GGGG__AGGG__CCGGAA__AA
6._MITC-000291
CCGG__GGGG__AGGG__GGAGAA__GG
 15 16 17 18 19 20 21 22 23 24 25 26   
_Input profile
CCCGCCCTAAGGAAGGACGGTTAAX_XX_X
1._RUQ_852
CCGGCC__AAGGAACCACGGCTCCX_XX_X
2._RUQ_852B
CCGG________AA________CCX_XX_X
3._RUQ_852
CCGG________AA________CCX_XX_X
4._RUQ_852
CCGGGGAGAAGGAAGGACGGAGCCX_XX_X
5._PA_120_[PER]_Fld#_172_Plt#_5
CCCGGGGGAAGGAGGGACGGGGCCX_XX_X
6._MITC-000291
AACCCGAAAAGGAGGGAAGGAGACX_XX_X

Input profile: PA_120_[PER] PA120[PER]

 
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._PA_120_[PER] RUQ_852

65 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_120_[PER] RUQ_852B

58.3 %
6 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._PA_120_[PER] RUQ_852

50 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

4._PA_120_[PER] RUQ_852

45.5 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._PA_120_[PER] PA_120_[PER]_Fld#_172_Plt#_5

45.5 %
22 shared markers

USDA-TARS, United States of America
Location: Field: 172, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

6._PA_120_[PER] MITC-000291

40.9 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144